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Items: 1 to 20 of 148

1.

Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR.

Cell. 2008 May 2;133(3):523-36. doi: 10.1016/j.cell.2008.03.029.

2.

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR.

Cell. 2006 Sep 22;126(6):1189-201. Epub 2006 Aug 31.

3.

Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq.

Li J, Li R, Wang Y, Hu X, Zhao Y, Li L, Feng C, Gu X, Liang F, Lamont SJ, Hu S, Zhou H, Li N.

BMC Genomics. 2015 Oct 23;16:851. doi: 10.1186/s12864-015-2098-8.

4.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE.

Nature. 2008 Mar 13;452(7184):215-9. doi: 10.1038/nature06745. Epub 2008 Feb 17.

5.

RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1.

Sasaki T, Kobayashi A, Saze H, Kakutani T.

Plant J. 2012 Jun;70(5):750-8. doi: 10.1111/j.1365-313X.2012.04911.x. Epub 2012 Mar 6.

6.

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.

Dubin MJ, Zhang P, Meng D, Remigereau MS, Osborne EJ, Paolo Casale F, Drewe P, Kahles A, Jean G, Vilhjálmsson B, Jagoda J, Irez S, Voronin V, Song Q, Long Q, Rätsch G, Stegle O, Clark RM, Nordborg M.

Elife. 2015 May 5;4:e05255. doi: 10.7554/eLife.05255.

7.

Genetic analyses of DNA methyltransferases in Arabidopsis thaliana.

Zhang X, Jacobsen SE.

Cold Spring Harb Symp Quant Biol. 2006;71:439-47.

PMID:
17381326
8.

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.

Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Rowley MJ, Gregory BD, Ecker JR, Tang H, Pikaard CS.

Genes Dev. 2012 Aug 15;26(16):1825-36. doi: 10.1101/gad.197772.112. Epub 2012 Aug 1.

9.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

10.

Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.

Mathieu O, Reinders J, Caikovski M, Smathajitt C, Paszkowski J.

Cell. 2007 Sep 7;130(5):851-62.

11.

Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE.

Cell. 2013 Jan 17;152(1-2):352-64. doi: 10.1016/j.cell.2012.10.054. Epub 2013 Jan 11. Erratum in: Cell. 2015 Jun 18;161(7):1697-8.

12.

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks.

Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, Sato S, Nakabayashi K, Hata K, Sotomaru Y, Suzuki Y, Kono T.

PLoS Genet. 2012 Jan;8(1):e1002440. doi: 10.1371/journal.pgen.1002440. Epub 2012 Jan 5.

13.

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.

14.

RNA-directed DNA methylation.

Zhang H, Zhu JK.

Curr Opin Plant Biol. 2011 Apr;14(2):142-7. doi: 10.1016/j.pbi.2011.02.003. Epub 2011 Mar 17. Review.

15.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression.

Li X, Zhu J, Hu F, Ge S, Ye M, Xiang H, Zhang G, Zheng X, Zhang H, Zhang S, Li Q, Luo R, Yu C, Yu J, Sun J, Zou X, Cao X, Xie X, Wang J, Wang W.

BMC Genomics. 2012 Jul 2;13:300.

16.

Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana.

You W, Tyczewska A, Spencer M, Daxinger L, Schmid MW, Grossniklaus U, Simon SA, Meyers BC, Matzke AJ, Matzke M.

BMC Plant Biol. 2012 Apr 19;12:51. doi: 10.1186/1471-2229-12-51.

17.

Unlocking the Arabidopsis epigenome.

Reinders J, Paszkowski J.

Epigenetics. 2009 Nov 16;4(8):557-63. Epub 2009 Nov 18. Review.

PMID:
19934651
18.

Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis.

Kurihara Y, Matsui A, Kawashima M, Kaminuma E, Ishida J, Morosawa T, Mochizuki Y, Kobayashi N, Toyoda T, Shinozaki K, Seki M.

Biochem Biophys Res Commun. 2008 Nov 21;376(3):553-7. doi: 10.1016/j.bbrc.2008.09.046. Epub 2008 Sep 19.

PMID:
18805399
19.

Transgenerational epigenetic instability is a source of novel methylation variants.

Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR.

Science. 2011 Oct 21;334(6054):369-73. doi: 10.1126/science.1212959. Epub 2011 Sep 15.

20.
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