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Items: 1 to 20 of 221

1.

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.

Minin VN, Bloomquist EW, Suchard MA.

Mol Biol Evol. 2008 Jul;25(7):1459-71. doi: 10.1093/molbev/msn090. Epub 2008 Apr 11.

2.

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.

Gill MS, Lemey P, Bennett SN, Biek R, Suchard MA.

Syst Biol. 2016 Nov;65(6):1041-1056. Epub 2016 Jul 1.

3.

Bayesian coalescent inference of past population dynamics from molecular sequences.

Drummond AJ, Rambaut A, Shapiro B, Pybus OG.

Mol Biol Evol. 2005 May;22(5):1185-92. Epub 2005 Feb 9.

PMID:
15703244
4.

Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies.

Palacios JA, Minin VN.

Biometrics. 2013 Mar;69(1):8-18. doi: 10.1111/biom.12003. Epub 2013 Feb 14.

PMID:
23409705
5.
6.

Optimal point process filtering and estimation of the coalescent process.

Parag KV, Pybus OG.

J Theor Biol. 2017 May 21;421:153-167. doi: 10.1016/j.jtbi.2017.04.001. Epub 2017 Apr 3.

PMID:
28385666
7.

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.

Popinga A, Vaughan T, Stadler T, Drummond AJ.

Genetics. 2015 Feb;199(2):595-607. doi: 10.1534/genetics.114.172791. Epub 2014 Dec 19.

8.

An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.

Lan S, Palacios JA, Karcher M, Minin VN, Shahbaba B.

Bioinformatics. 2015 Oct 15;31(20):3282-9. doi: 10.1093/bioinformatics/btv378. Epub 2015 Jun 20.

9.

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.

Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA.

Mol Biol Evol. 2013 Mar;30(3):713-24. doi: 10.1093/molbev/mss265. Epub 2012 Nov 22.

10.

Bayesian inference of population size history from multiple loci.

Heled J, Drummond AJ.

BMC Evol Biol. 2008 Oct 23;8:289. doi: 10.1186/1471-2148-8-289.

11.

Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies.

Palacios JA, Wakeley J, Ramachandran S.

Genetics. 2015 Sep;201(1):281-304. doi: 10.1534/genetics.115.177980. Epub 2015 Jul 28.

12.

Phylodynamic inference for structured epidemiological models.

Rasmussen DA, Volz EM, Koelle K.

PLoS Comput Biol. 2014 Apr 17;10(4):e1003570. doi: 10.1371/journal.pcbi.1003570. eCollection 2014 Apr.

13.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Coalescent-based estimation of population parameters when the number of demes changes over time.

Ewing G, Rodrigo A; SMBE Tri-National Young Investigators.

Mol Biol Evol. 2006 May;23(5):988-96. Epub 2006 Feb 22.

PMID:
16495347
14.

Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

Beerli P.

Bioinformatics. 2006 Feb 1;22(3):341-5. Epub 2005 Nov 29.

PMID:
16317072
15.

Estimating variable effective population sizes from multiple genomes: a sequentially markov conditional sampling distribution approach.

Sheehan S, Harris K, Song YS.

Genetics. 2013 Jul;194(3):647-62. doi: 10.1534/genetics.112.149096. Epub 2013 Apr 22.

16.

Bayesian semiparametric intensity estimation for inhomogeneous spatial point processes.

Yue YR, Loh JM.

Biometrics. 2011 Sep;67(3):937-46. doi: 10.1111/j.1541-0420.2010.01531.x. Epub 2010 Dec 22.

PMID:
21175553
17.

The effects of rate variation on ancestral inference in the coalescent.

Markovtsova L, Marjoram P, Tavaré S.

Genetics. 2000 Nov;156(3):1427-36.

18.

The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach.

Pybus OG, Drummond AJ, Nakano T, Robertson BH, Rambaut A.

Mol Biol Evol. 2003 Mar;20(3):381-7.

PMID:
12644558
19.

Complex population dynamics and the coalescent under neutrality.

Volz EM.

Genetics. 2012 Jan;190(1):187-201. doi: 10.1534/genetics.111.134627. Epub 2011 Oct 31. Erratum in: Genetics. 2013 Nov;195(3):1199.

20.

Bayesian selection of nucleotide substitution models and their site assignments.

Wu CH, Suchard MA, Drummond AJ.

Mol Biol Evol. 2013 Mar;30(3):669-88. doi: 10.1093/molbev/mss258. Epub 2012 Dec 11.

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