Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 104

1.

Domain annotation of trimeric autotransporter adhesins--daTAA.

Szczesny P, Lupas A.

Bioinformatics. 2008 May 15;24(10):1251-6. doi: 10.1093/bioinformatics/btn118. Epub 2008 Apr 8.

2.

The Haemophilus influenzae Hia autotransporter contains an unusually short trimeric translocator domain.

Surana NK, Cutter D, Barenkamp SJ, St Geme JW 3rd.

J Biol Chem. 2004 Apr 9;279(15):14679-85. Epub 2004 Jan 15.

3.

Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica.

Koretke KK, Szczesny P, Gruber M, Lupas AN.

J Struct Biol. 2006 Aug;155(2):154-61. Epub 2006 Apr 3.

PMID:
16675268
4.

Structure of the head of the Bartonella adhesin BadA.

Szczesny P, Linke D, Ursinus A, Bär K, Schwarz H, Riess TM, Kempf VA, Lupas AN, Martin J, Zeth K.

PLoS Pathog. 2008 Aug 8;4(8):e1000119. doi: 10.1371/journal.ppat.1000119.

5.

A domain dictionary of trimeric autotransporter adhesins.

Bassler J, Hernandez Alvarez B, Hartmann MD, Lupas AN.

Int J Med Microbiol. 2015 Feb;305(2):265-75. doi: 10.1016/j.ijmm.2014.12.010. Epub 2014 Dec 24. Review.

6.

A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins.

Alvarez BH, Gruber M, Ursinus A, Dunin-Horkawicz S, Lupas AN, Zeth K.

J Struct Biol. 2010 May;170(2):236-45. doi: 10.1016/j.jsb.2010.02.009. Epub 2010 Feb 21.

PMID:
20178846
7.

Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins.

Hoiczyk E, Roggenkamp A, Reichenbecher M, Lupas A, Heesemann J.

EMBO J. 2000 Nov 15;19(22):5989-99.

8.

DOMAC: an accurate, hybrid protein domain prediction server.

Cheng J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.

9.

SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.

Gewehr JE, Zimmer R.

Bioinformatics. 2006 Jan 15;22(2):181-7. Epub 2005 Nov 2.

PMID:
16267083
10.
11.

SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks.

Sachdeva G, Kumar K, Jain P, Ramachandran S.

Bioinformatics. 2005 Feb 15;21(4):483-91. Epub 2004 Sep 16.

PMID:
15374866
12.

ProClust: improved clustering of protein sequences with an extended graph-based approach.

Pipenbacher P, Schliep A, Schneckener S, Schönhuth A, Schomburg D, Schrader R.

Bioinformatics. 2002;18 Suppl 2:S182-91.

PMID:
12386002
13.

REPPER--repeats and their periodicities in fibrous proteins.

Gruber M, Söding J, Lupas AN.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W239-43.

14.

Repetitive architecture of the Haemophilus influenzae Hia trimeric autotransporter.

Meng G, St Geme JW 3rd, Waksman G.

J Mol Biol. 2008 Dec 26;384(4):824-36. doi: 10.1016/j.jmb.2008.09.085. Epub 2008 Oct 11.

15.

ProBias: a web-server for the identification of user-specified types of compositionally biased segments in protein sequences.

Kuznetsov IB.

Bioinformatics. 2008 Jul 1;24(13):1534-5. doi: 10.1093/bioinformatics/btn233. Epub 2008 May 14.

PMID:
18480099
16.

Trimeric autotransporters of Haemophilus parasuis: generation of an extensive passenger domain repertoire specific for pathogenic strains.

Pina S, Olvera A, Barceló A, Bensaid A.

J Bacteriol. 2009 Jan;191(2):576-87. doi: 10.1128/JB.00703-08. Epub 2008 Nov 14.

17.

HadA is an atypical new multifunctional trimeric coiled-coil adhesin of Haemophilus influenzae biogroup aegyptius, which promotes entry into host cells.

Serruto D, Spadafina T, Scarselli M, Bambini S, Comanducci M, Höhle S, Kilian M, Veiga E, Cossart P, Oggioni MR, Savino S, Ferlenghi I, Taddei AR, Rappuoli R, Pizza M, Masignani V, Aricò B.

Cell Microbiol. 2009 Jul;11(7):1044-63. doi: 10.1111/j.1462-5822.2009.01306.x. Epub 2009 Mar 12.

PMID:
19290916
18.

De novo identification of highly diverged protein repeats by probabilistic consistency.

Biegert A, Söding J.

Bioinformatics. 2008 Mar 15;24(6):807-14. doi: 10.1093/bioinformatics/btn039. Epub 2008 Feb 1.

PMID:
18245125
19.

Multiple alignment of protein sequences with repeats and rearrangements.

Phuong TM, Do CB, Edgar RC, Batzoglou S.

Nucleic Acids Res. 2006;34(20):5932-42. Epub 2006 Oct 26.

20.

Meta-DP: domain prediction meta-server.

Saini HK, Fischer D.

Bioinformatics. 2005 Jun 15;21(12):2917-20. Epub 2005 Apr 19.

PMID:
15840708

Supplemental Content

Support Center