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Items: 1 to 20 of 79

1.

The prokaryotic tree of life: past, present... and future?

McInerney JO, Cotton JA, Pisani D.

Trends Ecol Evol. 2008 May;23(5):276-81. doi: 10.1016/j.tree.2008.01.008. Epub 2008 Mar 25. Review.

PMID:
18367290
2.

Lateral genomics.

Doolittle WF.

Trends Cell Biol. 1999 Dec;9(12):M5-8.

PMID:
10611671
3.

Determination of whole prokaryotic phylogeny by the development of a random extraction method.

Saruhashi S, Hamada K, Horiike T, Shinozawa T.

Gene. 2007 May 1;392(1-2):157-63. Epub 2006 Dec 12.

PMID:
17275216
4.

The tree of life viewed through the contents of genomes.

House CH.

Methods Mol Biol. 2009;532:141-61. doi: 10.1007/978-1-60327-853-9_8. Review.

PMID:
19271183
5.

Genome-based phylogenetic analysis of Streptomyces and its relatives.

Alam MT, Merlo ME, Takano E, Breitling R.

Mol Phylogenet Evol. 2010 Mar;54(3):763-72. doi: 10.1016/j.ympev.2009.11.019. Epub 2009 Dec 3.

PMID:
19948233
6.

SHOT: a web server for the construction of genome phylogenies.

Korbel JO, Snel B, Huynen MA, Bork P.

Trends Genet. 2002 Mar;18(3):158-62.

PMID:
11858840
7.

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B.

J Mol Evol. 2004 May;58(5):527-39.

PMID:
15170256
8.

Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences.

Wagner A, de la Chaux N.

Mol Genet Genomics. 2008 Nov;280(5):397-408. doi: 10.1007/s00438-008-0373-y. Epub 2008 Aug 28.

PMID:
18751731
9.

Phylogenetics and the cohesion of bacterial genomes.

Daubin V, Moran NA, Ochman H.

Science. 2003 Aug 8;301(5634):829-32.

10.

The ring of life provides evidence for a genome fusion origin of eukaryotes.

Rivera MC, Lake JA.

Nature. 2004 Sep 9;431(7005):152-5.

PMID:
15356622
11.

Evolution of the RNA polymerase B' subunit gene (rpoB') in Halobacteriales: a complementary molecular marker to the SSU rRNA gene.

Walsh DA, Bapteste E, Kamekura M, Doolittle WF.

Mol Biol Evol. 2004 Dec;21(12):2340-51. Epub 2004 Sep 8.

PMID:
15356285
12.

Bacterial molecular phylogeny using supertree approach.

Daubin V, Gouy M, Perrière G.

Genome Inform. 2001;12:155-64.

PMID:
11791234
13.

An evaluation of the phylogenetic position of the dinoflagellate Crypthecodinium cohnii based on 5S rRNA characterization.

Hinnebusch AG, Klotz LC, Blanken RL, Loeblich AR 3rd.

J Mol Evol. 1981;17(6):334-7.

PMID:
7197304
14.

[Foundations of the new phylogenetics].

Pavlinov IIa.

Zh Obshch Biol. 2004 Jul-Aug;65(4):334-66. Russian.

PMID:
15490579
15.
16.

Revisiting the concept of lineage in prokaryotes: a phylogenetic perspective.

Boucher Y, Bapteste E.

Bioessays. 2009 May;31(5):526-36. doi: 10.1002/bies.200800216.

PMID:
19319912
17.
18.

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2008 Sep;31(4):241-50. doi: 10.1016/j.syapm.2008.07.001. Epub 2008 Aug 9.

PMID:
18692976
19.

An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances.

Van de Peer Y, Baldauf SL, Doolittle WF, Meyer A.

J Mol Evol. 2000 Dec;51(6):565-76.

PMID:
11116330
20.

Biochemical pathways in prokaryotes can be traced backward through evolutionary time.

Jensen RA.

Mol Biol Evol. 1985 Mar;2(2):92-108. Review.

PMID:
2897061

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