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Items: 1 to 20 of 80

1.

Rate-distortion scenario for the emergence and evolution of noisy molecular codes.

Tlusty T.

Phys Rev Lett. 2008 Feb 1;100(4):048101. Epub 2008 Jan 29.

PMID:
18352335
2.

A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes.

Tlusty T.

Phys Life Rev. 2010 Sep;7(3):362-76. doi: 10.1016/j.plrev.2010.06.002. Epub 2010 Jun 4. Review.

PMID:
20558115
3.

A model for the emergence of the genetic code as a transition in a noisy information channel.

Tlusty T.

J Theor Biol. 2007 Nov 21;249(2):331-42. Epub 2007 Aug 10.

PMID:
17826800
4.

A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost.

Tlusty T.

Phys Biol. 2008 Mar 4;5(1):016001. doi: 10.1088/1478-3975/5/1/016001.

PMID:
18367781
5.

On the evolution of redundancy in genetic codes.

Ardell DH, Sella G.

J Mol Evol. 2001 Oct-Nov;53(4-5):269-81.

PMID:
11675587
6.

Inclusion of the fitness sharing technique in an evolutionary algorithm to analyze the fitness landscape of the genetic code adaptability.

Santos J, Monteagudo Á.

BMC Bioinformatics. 2017 Mar 27;18(1):195. doi: 10.1186/s12859-017-1608-x.

7.

Thermodynamic approach to a possible theory of the evolution of a genetic code.

Macchiato MF, Tramontano A.

Z Naturforsch C. 1982 Oct;37(10):1031-7.

PMID:
7180092
8.

Casting polymer nets to optimize noisy molecular codes.

Tlusty T.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8238-43. doi: 10.1073/pnas.0710274105. Epub 2008 Jun 11.

9.

Temporal and dimensional effects in evolutionary graph theory.

Paley CJ, Taraskin SN, Elliott SR.

Phys Rev Lett. 2007 Mar 2;98(9):098103. Epub 2007 Feb 27.

PMID:
17359200
10.

Comparison of translation loads for standard and alternative genetic codes.

Sammet SG, Bastolla U, Porto M.

BMC Evol Biol. 2010 Jun 14;10:178. doi: 10.1186/1471-2148-10-178.

11.

Topological, statistical, and dynamical origins of genetic code. Comment on "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes" by T. Tlusty.

Takagi H, Kaneko K.

Phys Life Rev. 2010 Sep;7(3):379-80; discussion 381-4. doi: 10.1016/j.plrev.2010.08.001. Epub 2010 Aug 5. No abstract available.

PMID:
20709609
12.
13.

Ambiguity and the evolution of the genetic code.

Kocherlakota RR, Acland ND.

Orig Life. 1982 Mar;12(1):71-80.

PMID:
7133671
14.

Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift.

Shah P, Gilchrist MA.

Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10231-6. doi: 10.1073/pnas.1016719108. Epub 2011 Jun 6.

15.
16.

Evolutionary branching in deme-structured populations.

Wakano JY, Lehmann L.

J Theor Biol. 2014 Jun 21;351:83-95. doi: 10.1016/j.jtbi.2014.02.036. Epub 2014 Mar 12.

PMID:
24631046
17.

Study of the genetic code adaptability by means of a genetic algorithm.

Santos J, Monteagudo A.

J Theor Biol. 2010 Jun 7;264(3):854-65. doi: 10.1016/j.jtbi.2010.02.041. Epub 2010 Feb 26.

PMID:
20219479
18.

The standard genetic code enhances adaptive evolution of proteins.

Zhu W, Freeland S.

J Theor Biol. 2006 Mar 7;239(1):63-70. Epub 2005 Dec 1.

PMID:
16325205
19.

Evolution of genetic codes through isologous diversification of cellular states.

Takagi H, Kaneko K, Yomo T.

Artif Life. 2000 Fall;6(4):283-305.

PMID:
11348583
20.

Emergence of species in evolutionary "simulated annealing".

Heo M, Kang L, Shakhnovich EI.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1869-74. doi: 10.1073/pnas.0809852106. Epub 2009 Jan 22.

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