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Items: 1 to 20 of 478

1.

Recent progress and future directions in protein-protein docking.

Ritchie DW.

Curr Protein Pept Sci. 2008 Feb;9(1):1-15. Review.

PMID:
18336319
2.

Improving CAPRI predictions: optimized desolvation for rigid-body docking.

Fernández-Recio J, Abagyan R, Totrov M.

Proteins. 2005 Aug 1;60(2):308-13.

PMID:
15981266
3.

Docking and scoring protein complexes: CAPRI 3rd Edition.

Lensink MF, Méndez R, Wodak SJ.

Proteins. 2007 Dec 1;69(4):704-18.

PMID:
17918726
4.

Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment.

Chelliah V, Blundell TL, Fernández-Recio J.

J Mol Biol. 2006 Apr 14;357(5):1669-82. Epub 2006 Jan 31.

PMID:
16488431
6.

Present and future challenges and limitations in protein-protein docking.

Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J.

Proteins. 2010 Jan;78(1):95-108. doi: 10.1002/prot.22564.

PMID:
19731373
7.

DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.

Gao Y, Douguet D, Tovchigrechko A, Vakser IA.

Proteins. 2007 Dec 1;69(4):845-51.

PMID:
17803215
8.

Identification of near-native structures by clustering protein docking conformations.

Lorenzen S, Zhang Y.

Proteins. 2007 Jul 1;68(1):187-94.

PMID:
17397057
9.

Docking and scoring protein interactions: CAPRI 2009.

Lensink MF, Wodak SJ.

Proteins. 2010 Nov 15;78(15):3073-84. doi: 10.1002/prot.22818.

PMID:
20806235
10.

Principles of docking: An overview of search algorithms and a guide to scoring functions.

Halperin I, Ma B, Wolfson H, Nussinov R.

Proteins. 2002 Jun 1;47(4):409-43. Review.

PMID:
12001221
12.

Blind predictions of protein interfaces by docking calculations in CAPRI.

Lensink MF, Wodak SJ.

Proteins. 2010 Nov 15;78(15):3085-95. doi: 10.1002/prot.22850.

PMID:
20839234
13.

Implicit flexibility in protein docking: cross-docking and local refinement.

Król M, Chaleil RA, Tournier AL, Bates PA.

Proteins. 2007 Dec 1;69(4):750-7.

PMID:
17671977
14.
15.

Prediction and scoring of docking poses with pyDock.

Grosdidier S, Pons C, Solernou A, Fernández-Recio J.

Proteins. 2007 Dec 1;69(4):852-8.

PMID:
17876821
16.

Classification of protein complexes based on docking difficulty.

Vajda S.

Proteins. 2005 Aug 1;60(2):176-80.

PMID:
15981248
17.

Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ.

Phys Biol. 2005 Nov 9;2(4):S156-65.

PMID:
16280621
18.

Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.

Pyrkov TV, Kosinsky YA, Arseniev AS, Priestle JP, Jacoby E, Efremov RG.

Proteins. 2007 Feb 1;66(2):388-98.

PMID:
17094116
19.

Protein-protein docking dealing with the unknown.

Moreira IS, Fernandes PA, Ramos MJ.

J Comput Chem. 2010 Jan 30;31(2):317-42. doi: 10.1002/jcc.21276. Review.

PMID:
19462412
20.

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