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Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p.

Miller MT, Higgin JJ, Hall TM.

Nat Struct Mol Biol. 2008 Apr;15(4):397-402. doi: 10.1038/nsmb.1390. Epub 2008 Mar 9.


A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs.

Zhu D, Stumpf CR, Krahn JM, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20192-7. doi: 10.1073/pnas.0812079106. Epub 2009 Nov 16.


Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site.

Valley CT, Porter DF, Qiu C, Campbell ZT, Hall TM, Wickens M.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6054-9. doi: 10.1073/pnas.1200521109. Epub 2012 Mar 30.


A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization.

Qiu C, McCann KL, Wine RN, Baserga SJ, Hall TM.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18554-9. doi: 10.1073/pnas.1407634112. Epub 2014 Dec 15.


Conditional regulation of Puf1p, Puf4p, and Puf5p activity alters YHB1 mRNA stability for a rapid response to toxic nitric oxide stress in yeast.

Russo J, Olivas WM.

Mol Biol Cell. 2015 Mar 15;26(6):1015-29. doi: 10.1091/mbc.E14-10-1452. Epub 2015 Jan 28.


Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains.

Dong S, Wang Y, Cassidy-Amstutz C, Lu G, Bigler R, Jezyk MR, Li C, Hall TM, Wang Z.

J Biol Chem. 2011 Jul 29;286(30):26732-42. doi: 10.1074/jbc.M111.244889. Epub 2011 Jun 8.


Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket.

Qiu C, Kershner A, Wang Y, Holley CP, Wilinski D, Keles S, Kimble J, Wickens M, Hall TM.

J Biol Chem. 2012 Feb 24;287(9):6949-57. doi: 10.1074/jbc.M111.326264. Epub 2011 Dec 28.


Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein.

Wang Y, Opperman L, Wickens M, Hall TM.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20186-91. doi: 10.1073/pnas.0812076106. Epub 2009 Nov 9.


Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.

Hogan GJ, Brown PO, Herschlag D.

PLoS Biol. 2015 Nov 20;13(11):e1002307. doi: 10.1371/journal.pbio.1002307. eCollection 2015.


Puf1p acts in combination with other yeast Puf proteins to control mRNA stability.

Ulbricht RJ, Olivas WM.

RNA. 2008 Feb;14(2):246-62. Epub 2007 Dec 19.


Target selection by natural and redesigned PUF proteins.

Porter DF, Koh YY, VanVeller B, Raines RT, Wickens M.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15868-73. doi: 10.1073/pnas.1508501112. Epub 2015 Dec 14.


RNA regulatory networks diversified through curvature of the PUF protein scaffold.

Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M.

Nat Commun. 2015 Sep 14;6:8213. doi: 10.1038/ncomms9213.


A universal code for RNA recognition by PUF proteins.

Filipovska A, Razif MF, Nygård KK, Rackham O.

Nat Chem Biol. 2011 May 15;7(7):425-7. doi: 10.1038/nchembio.577.


A protein.protein interaction platform involved in recruitment of GLD-3 to the FBF.fem-3 mRNA complex.

Wu J, Campbell ZT, Menichelli E, Wickens M, Williamson JR.

J Mol Biol. 2013 Feb 22;425(4):738-54. doi: 10.1016/j.jmb.2012.11.013. Epub 2012 Nov 15.


Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.

Gupta YK, Nair DT, Wharton RP, Aggarwal AK.

Structure. 2008 Apr;16(4):549-57. doi: 10.1016/j.str.2008.01.006. Epub 2008 Mar 6.


Divergent RNA binding specificity of yeast Puf2p.

Yosefzon Y, Koh YY, Chritton JJ, Lande A, Leibovich L, Barziv L, Petzold C, Yakhini Z, Mandel-Gutfreund Y, Wickens M, Arava Y.

RNA. 2011 Aug;17(8):1479-88. doi: 10.1261/rna.2700311. Epub 2011 Jun 17.


Understanding and engineering RNA sequence specificity of PUF proteins.

Lu G, Dolgner SJ, Hall TM.

Curr Opin Struct Biol. 2009 Feb;19(1):110-5. doi: 10.1016/ Epub 2009 Jan 29.


A Nucleolar PUF RNA-binding Protein with Specificity for a Unique RNA Sequence.

Zhang C, Muench DG.

J Biol Chem. 2015 Dec 11;290(50):30108-18. doi: 10.1074/jbc.M115.691675. Epub 2015 Oct 20.


PUF Proteins: Cellular Functions and Potential Applications.

Kiani SJ, Taheri T, Rafati S, Samimi-Rad K.

Curr Protein Pept Sci. 2017;18(3):250-261. doi: 10.2174/1389203717666160914172908. Review.


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