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Items: 1 to 20 of 93

1.

Two plus two does not equal three: statistical tests for multiple genome comparison.

Raghupathy N, Hoberman R, Durand D.

J Bioinform Comput Biol. 2008 Feb;6(1):1-22.

PMID:
18324742
2.
3.

Comparative annotation of viral genomes with non-conserved gene structure.

de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 May 1;23(9):1080-9. Epub 2007 Mar 6.

PMID:
17341494
4.

Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.

Nicorici D, Yli-Harja O, Astola J.

IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):82-9. No abstract available.

PMID:
16485395
5.

Accurate prediction of orthologous gene groups in microbes.

Wu H, Mao F, Olman V, Xu Y.

Proc IEEE Comput Syst Bioinform Conf. 2005:73-9.

PMID:
16447964
6.

Statistical detection of chromosomal homology using shared-gene density alone.

Hampson SE, Gaut BS, Baldi P.

Bioinformatics. 2005 Apr 15;21(8):1339-48. Epub 2004 Dec 7.

PMID:
15585535
7.

CLAGen: a tool for clustering and annotating gene sequences using a suffix tree algorithm.

Han Si, Lee SG, Kim KH, Choi CJ, Kim YH, Hwang KS.

Biosystems. 2006 Jun;84(3):175-82. Epub 2005 Dec 27.

PMID:
16384634
8.

Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.

Yamanishi Y, Vert JP, Nakaya A, Kanehisa M.

Bioinformatics. 2003;19 Suppl 1:i323-30.

PMID:
12855477
9.

Statistical power of phylo-HMM for evolutionarily conserved element detection.

Fan X, Zhu J, Schadt EE, Liu JS.

BMC Bioinformatics. 2007 Oct 5;8:374.

10.

Discovery of regulatory elements in vertebrates through comparative genomics.

Prakash A, Tompa M.

Nat Biotechnol. 2005 Oct;23(10):1249-56.

PMID:
16211068
11.

Fast identification and statistical evaluation of segmental homologies in comparative maps.

Calabrese PP, Chakravarty S, Vision TJ.

Bioinformatics. 2003;19 Suppl 1:i74-80.

PMID:
12855440
12.

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.

PMID:
16269416
13.

ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R.

Bioinformatics. 2004 Dec 12;20(18):3462-5. Epub 2004 Jul 22.

PMID:
15271781
14.

Improving the specificity of high-throughput ortholog prediction.

Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS.

BMC Bioinformatics. 2006 May 28;7:270.

15.

A universal operon predictor for prokaryotic genomes.

Li G, Che D, Xu Y.

J Bioinform Comput Biol. 2009 Feb;7(1):19-38.

PMID:
19226658
16.

Clustering of main orthologs for multiple genomes.

Fu Z, Jiang T.

Comput Syst Bioinformatics Conf. 2007;6:195-201.

17.

Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.

Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A.

J Biotechnol. 2008 Aug 31;136(1-2):31-7. doi: 10.1016/j.jbiotec.2008.04.014. Epub 2008 May 9.

PMID:
18562031
18.

Clustering of main orthologs for multiple genomes.

Fu Z, Jiang T.

J Bioinform Comput Biol. 2008 Jun;6(3):573-84.

PMID:
18574863
19.

The statistical analysis of spatially clustered genes under the maximum gap criterion.

Hoberman R, Sankoff D, Durand D.

J Comput Biol. 2005 Oct;12(8):1083-102.

PMID:
16241899
20.

Comparison of statistical significance criteria.

Régnier M, Vandenbogaert M.

J Bioinform Comput Biol. 2006 Apr;4(2):537-51.

PMID:
16819801

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