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Items: 1 to 20 of 109

1.

Comprehensive high-throughput arrays for relative methylation (CHARM).

Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP.

Genome Res. 2008 May;18(5):780-90. doi: 10.1101/gr.7301508. Epub 2008 Mar 3.

2.

Comprehensive high-throughput arrays for relative methylation (CHARM).

Ladd-Acosta C, Aryee MJ, Ordway JM, Feinberg AP.

Curr Protoc Hum Genet. 2010 Apr;Chapter 20:Unit 20.1.1-19. doi: 10.1002/0471142905.hg2001s65.

PMID:
20373514
3.

Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms.

Rajendram R, Ferreira JC, Grafodatskaya D, Choufani S, Chiang T, Pu S, Butcher DT, Wodak SJ, Weksberg R.

Epigenetics. 2011 Apr;6(4):410-5. Epub 2011 Apr 1.

PMID:
21343703
4.

Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array.

Yang L, Zhang K, Dai W, He X, Zhao Q, Wang J, Sun ZS.

BMC Genomics. 2011 Jan 6;12:10. doi: 10.1186/1471-2164-12-10.

5.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

6.

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Seifert M, Cortijo S, Colomé-Tatché M, Johannes F, Roudier F, Colot V.

Bioinformatics. 2012 Nov 15;28(22):2930-9. doi: 10.1093/bioinformatics/bts562. Epub 2012 Sep 17.

PMID:
22989518
7.

Methylation profiling using methylated DNA immunoprecipitation and tiling array hybridization.

Cheung HH, Lee TL, Rennert OM, Chan WY.

Methods Mol Biol. 2012;825:115-26. doi: 10.1007/978-1-61779-436-0_10.

8.

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.

Pelizzola M, Koga Y, Urban AE, Krauthammer M, Weissman S, Halaban R, Molinaro AM.

Genome Res. 2008 Oct;18(10):1652-9. doi: 10.1101/gr.080721.108. Epub 2008 Sep 2.

9.

MeDIP-on-Chip for methylation profiling.

Hsu YW, Huang RL, Lai HC.

Methods Mol Biol. 2015;1249:281-90. doi: 10.1007/978-1-4939-2013-6_21.

PMID:
25348314
10.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

11.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ.

Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1.

PMID:
20818161
12.

Whole genome methylation profiling by immunoprecipitation of methylated DNA.

Sharp AJ.

Methods Mol Biol. 2012;925:69-78. doi: 10.1007/978-1-62703-011-3_5.

PMID:
22907491
13.

Standardization and quality controls for the methylated DNA immunoprecipitation technique.

Lisanti S, von Zglinicki T, Mathers JC.

Epigenetics. 2012 Jun 1;7(6):615-25. doi: 10.4161/epi.20028. Epub 2012 Jun 1.

PMID:
22507898
14.

Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences.

Lee RS, Tamashiro KL, Aryee MJ, Murakami P, Seifuddin F, Herb B, Huo Y, Rongione M, Feinberg AP, Moran TH, Potash JB.

Epigenetics. 2011 Nov;6(11):1378-90. doi: 10.4161/epi.6.11.18072. Epub 2011 Nov 1.

15.

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats.

Saied MH, Marzec J, Khalid S, Smith P, Down TA, Rakyan VK, Molloy G, Raghavan M, Debernardi S, Young BD.

PLoS One. 2012;7(3):e33213. doi: 10.1371/journal.pone.0033213. Epub 2012 Mar 29.

16.

MMASS: an optimized array-based method for assessing CpG island methylation.

Ibrahim AE, Thorne NP, Baird K, Barbosa-Morais NL, Tavaré S, Collins VP, Wyllie AH, Arends MJ, Brenton JD.

Nucleic Acids Res. 2006;34(20):e136. Epub 2006 Oct 13.

17.

A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling.

Clark C, Palta P, Joyce CJ, Scott C, Grundberg E, Deloukas P, Palotie A, Coffey AJ.

PLoS One. 2012;7(11):e50233. doi: 10.1371/journal.pone.0050233. Epub 2012 Nov 29.

18.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

19.

The HELP assay.

Oda M, Greally JM.

Methods Mol Biol. 2009;507:77-87. doi: 10.1007/978-1-59745-522-0_7.

PMID:
18987808
20.

GoldenGate assay for DNA methylation profiling.

Bibikova M, Fan JB.

Methods Mol Biol. 2009;507:149-63. doi: 10.1007/978-1-59745-522-0_12.

PMID:
18987813

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