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Items: 1 to 20 of 497

1.

Optimization of the Affymetrix GeneChip Mapping 10K 2.0 Assay for routine clinical use on formalin-fixed paraffin-embedded tissues.

Lyons-Weiler M, Hagenkord J, Sciulli C, Dhir R, Monzon FA.

Diagn Mol Pathol. 2008 Mar;17(1):3-13. doi: 10.1097/PDM.0b013e31815aca30.

PMID:
18303412
2.

Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue.

Thompson ER, Herbert SC, Forrest SM, Campbell IG.

Hum Mutat. 2005 Oct;26(4):384-9.

PMID:
16116623
3.

Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays.

Tuefferd M, De Bondt A, Van Den Wyngaert I, Talloen W, Verbeke T, Carvalho B, Clevert DA, Alifano M, Raghavan N, Amaratunga D, Göhlmann H, Broët P, Camilleri-Broët S.

Genes Chromosomes Cancer. 2008 Nov;47(11):957-64. doi: 10.1002/gcc.20599.

PMID:
18663747
4.

Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays.

Jacobs S, Thompson ER, Nannya Y, Yamamoto G, Pillai R, Ogawa S, Bailey DK, Campbell IG.

Cancer Res. 2007 Mar 15;67(6):2544-51.

5.

Whole genome SNP arrays as a potential diagnostic tool for the detection of characteristic chromosomal aberrations in renal epithelial tumors.

Monzon FA, Hagenkord JM, Lyons-Weiler MA, Balani JP, Parwani AV, Sciulli CM, Li J, Chandran UR, Bastacky SI, Dhir R.

Mod Pathol. 2008 May;21(5):599-608. doi: 10.1038/modpathol.2008.20. Epub 2008 Feb 8.

6.

Reliable high-throughput genotyping and loss-of-heterozygosity detection in formalin-fixed, paraffin-embedded tumors using single nucleotide polymorphism arrays.

Lips EH, Dierssen JW, van Eijk R, Oosting J, Eilers PH, Tollenaar RA, de Graaf EJ, van't Slot R, Wijmenga C, Morreau H, van Wezel T.

Cancer Res. 2005 Nov 15;65(22):10188-91.

7.

Oligonucleotide array outperforms SNP array on formalin-fixed paraffin-embedded clinical samples.

Nasri S, Anjomshoaa A, Song S, Guilford P, McNoe L, Black M, Phillips V, Reeve A, Humar B.

Cancer Genet Cytogenet. 2010 Apr 1;198(1):1-6. doi: 10.1016/j.cancergencyto.2009.12.002.

PMID:
20303007
8.

Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles.

Mc Sherry EA, Mc Goldrick A, Kay EW, Hopkins AM, Gallagher WM, Dervan PA.

Clin Genet. 2007 Nov;72(5):441-7.

PMID:
17935507
9.

Loss of heterozygosity and copy number abnormality in clear cell renal cell carcinoma discovered by high-density affymetrix 10K single nucleotide polymorphism mapping array.

Toma MI, Grosser M, Herr A, Aust DE, Meye A, Hoefling C, Fuessel S, Wuttig D, Wirth MP, Baretton GB.

Neoplasia. 2008 Jul;10(7):634-42.

10.

The utility and limitation of single nucleotide polymorphism analysis on whole genome amplified mesenchymal tumour DNA in formalin fixed tumour samples.

Liang CW, Lee YS, Marino-Enriquez A, Tsui K, Huang SH.

Pathology. 2012 Jan;44(1):33-41. doi: 10.1097/PAT.0b013e32834e411e.

PMID:
22157688
11.

Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.

Aviel-Ronen S, Qi Zhu C, Coe BP, Liu N, Watson SK, Lam WL, Tsao MS.

BMC Genomics. 2006 Dec 12;7:312.

12.

Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.

Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H.

PLoS One. 2009;4(5):e5548. doi: 10.1371/journal.pone.0005548. Epub 2009 May 14.

13.

Evaluating the repair of DNA derived from formalin-fixed paraffin-embedded tissues prior to genomic profiling by SNP-CGH analysis.

Hosein AN, Song S, McCart Reed AE, Jayanthan J, Reid LE, Kutasovic JR, Cummings MC, Waddell N, Lakhani SR, Chenevix-Trench G, Simpson PT.

Lab Invest. 2013 Jun;93(6):701-10. doi: 10.1038/labinvest.2013.54. Epub 2013 Apr 8.

14.

Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples.

Scicchitano MS, Dalmas DA, Bertiaux MA, Anderson SM, Turner LR, Thomas RA, Mirable R, Boyce RW.

J Histochem Cytochem. 2006 Nov;54(11):1229-37. Epub 2006 Jul 24.

PMID:
16864893
15.

Microarray profiling of DNA extracted from FFPE tissues using SNP 6.0 Affymetrix platform.

Tuefferd M, de Bondt A, Van den Wyngaert I, Talloen W, Göhlmann H.

Methods Mol Biol. 2011;724:147-60. doi: 10.1007/978-1-61779-055-3_10.

PMID:
21370012
16.

Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.

Little SE, Vuononvirta R, Reis-Filho JS, Natrajan R, Iravani M, Fenwick K, Mackay A, Ashworth A, Pritchard-Jones K, Jones C.

Genomics. 2006 Feb;87(2):298-306. Epub 2005 Nov 2.

17.

Comparison of formalin-fixed and snap-frozen samples analyzed by multiplex ligation-dependent probe amplification for prognostic testing in uveal melanoma.

Lake SL, Kalirai H, Dopierala J, Damato BE, Coupland SE.

Invest Ophthalmol Vis Sci. 2012 May 4;53(6):2647-52. doi: 10.1167/iovs.12-9584.

PMID:
22427594
18.

RNA expression analysis of formalin-fixed paraffin-embedded tumors.

Penland SK, Keku TO, Torrice C, He X, Krishnamurthy J, Hoadley KA, Woosley JT, Thomas NE, Perou CM, Sandler RS, Sharpless NE.

Lab Invest. 2007 Apr;87(4):383-91. Epub 2007 Feb 12.

19.

Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays.

Linton K, Hey Y, Dibben S, Miller C, Freemont A, Radford J, Pepper S.

Biotechniques. 2009 Jul;47(1):587-96. doi: 10.2144/000113169.

20.

Data analysis considerations for detecting copy number changes in formalin-fixed, paraffin-embedded tissues.

Jacobs S.

Cold Spring Harb Protoc. 2012 Nov 1;2012(11):1203-9. doi: 10.1101/pdb.ip071761.

PMID:
23118356

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