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Items: 1 to 20 of 75

1.

Scanning the human genome at kilobase resolution.

Chen J, Kim YC, Jung YC, Xuan Z, Dworkin G, Zhang Y, Zhang MQ, Wang SM.

Genome Res. 2008 May;18(5):751-62. doi: 10.1101/gr.068304.107. Epub 2008 Feb 21.

2.

Simplified DGS procedure for large-scale genome structural study.

Jung YC, Xu J, Chen J, Kim Y, Winchester D, Wang SM.

Biotechniques. 2009 Nov;47(5):969-71. doi: 10.2144/000113294.

3.

Paired-end genomic signature tags: a method for the functional analysis of genomes and epigenomes.

Dunn JJ, McCorkle SR, Everett L, Anderson CW.

Genet Eng (N Y). 2007;28:159-73. Review.

PMID:
17153938
4.

Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags.

Gong Q, Tao Y, Yang JR, Cai J, Yuan Y, Ruan J, Yang J, Liu H, Li W, Lu X, Zhuang SM, Wang SM, Wu CI.

BMC Genomics. 2013 Jan 24;14:51. doi: 10.1186/1471-2164-14-51.

5.

Evidences showing wide presence of small genomic aberrations in chronic lymphocytic leukemia.

Kim YC, Jung YC, Chen J, Alhasan AH, Kaewsaard P, Zhang Y, Ma S, Rosen S, Wang SM.

BMC Res Notes. 2010 Dec 20;3:341. doi: 10.1186/1756-0500-3-341.

6.

Sensitive and accurate detection of copy number variants using read depth of coverage.

Yoon S, Xuan Z, Makarov V, Ye K, Sebat J.

Genome Res. 2009 Sep;19(9):1586-92. doi: 10.1101/gr.092981.109. Epub 2009 Aug 5.

7.

High-resolution human genome scanning using whole-genome BAC arrays.

Li J, Jiang T, Bejjani B, Rajcan-Separovic E, Cai WW.

Cold Spring Harb Symp Quant Biol. 2003;68:323-9. No abstract available.

PMID:
15338633
8.

Genome sequencing and assembly.

Grabherr MG, Mauceli E, Ma LJ.

Methods Mol Biol. 2011;722:1-9. doi: 10.1007/978-1-61779-040-9_1.

PMID:
21590409
9.

AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome.

Mei L, Ding X, Tsang SY, Pun FW, Ng SK, Yang J, Zhao C, Li D, Wan W, Yu CH, Tan TC, Poon WS, Leung GK, Ng HK, Zhang L, Xue H.

BMC Genomics. 2011 Nov 17;12:564. doi: 10.1186/1471-2164-12-564.

10.

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).

Ruan Y, Ooi HS, Choo SW, Chiu KP, Zhao XD, Srinivasan KG, Yao F, Choo CY, Liu J, Ariyaratne P, Bin WG, Kuznetsov VA, Shahab A, Sung WK, Bourque G, Palanisamy N, Wei CL.

Genome Res. 2007 Jun;17(6):828-38.

11.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
13.

Multiplex parallel pair-end-ditag sequencing approaches in system biology.

Ruan Y, Wei CL.

Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):224-34. doi: 10.1002/wsbm.40. Review.

PMID:
20836024
14.

Balanced-PCR amplification allows unbiased identification of genomic copy changes in minute cell and tissue samples.

Wang G, Brennan C, Rook M, Wolfe JL, Leo C, Chin L, Pan H, Liu WH, Price B, Makrigiorgos GM.

Nucleic Acids Res. 2004 May 21;32(9):e76.

15.

Comprehensive characterization of human genome variation by high coverage whole-genome sequencing of forty four Caucasians.

Shen H, Li J, Zhang J, Xu C, Jiang Y, Wu Z, Zhao F, Liao L, Chen J, Lin Y, Tian Q, Papasian CJ, Deng HW.

PLoS One. 2013;8(4):e59494. doi: 10.1371/journal.pone.0059494. Epub 2013 Apr 5.

16.

Alu repeat discovery and characterization within human genomes.

Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE.

Genome Res. 2011 Jun;21(6):840-9. doi: 10.1101/gr.115956.110. Epub 2010 Dec 3.

17.

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.

Caboche S, Audebert C, Lemoine Y, Hot D.

BMC Genomics. 2014 Apr 5;15:264. doi: 10.1186/1471-2164-15-264.

18.

Efficient identification of Y chromosome sequences in the human and Drosophila genomes.

Carvalho AB, Clark AG.

Genome Res. 2013 Nov;23(11):1894-907. doi: 10.1101/gr.156034.113. Epub 2013 Aug 6.

19.

Discovery of Western European R1b1a2 Y chromosome variants in 1000 genomes project data: an online community approach.

Rocca RA, Magoon G, Reynolds DF, Krahn T, Tilroe VO, Op den Velde Boots PM, Grierson AJ.

PLoS One. 2012;7(7):e41634. doi: 10.1371/journal.pone.0041634. Epub 2012 Jul 24.

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