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Items: 1 to 20 of 87

1.

Duplicate ditag analysis in LongSAGE.

Emmersen J.

Methods Mol Biol. 2008;387:143-50.

PMID:
18287629
2.

Discarding duplicate ditags in LongSAGE analysis may introduce significant error.

Emmersen J, Heidenblut AM, Høgh AL, Hahn SA, Welinder KG, Nielsen KL.

BMC Bioinformatics. 2007 Mar 14;8:92.

3.

Extraction and annotation of SAGE tags using sequence quality values.

Emmersen J.

Methods Mol Biol. 2008;387:123-32.

PMID:
18287627
4.
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6.

5'- and 3'-RACE from LongSAGE tags.

Nielsen KL.

Methods Mol Biol. 2008;387:109-20.

PMID:
18287626
7.

Generation of high-quantity and quality tag/ditag cDNAs for SAGE analysis.

Lee S, Chen J, Zhou G, Wang SM.

Biotechniques. 2001 Aug;31(2):348-50, 352-4.

PMID:
11515372
8.

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.

Khattra J, Delaney AD, Zhao Y, Siddiqui A, Asano J, McDonald H, Pandoh P, Dhalla N, Prabhu AL, Ma K, Lee S, Ally A, Tam A, Sa D, Rogers S, Charest D, Stott J, Zuyderduyn S, Varhol R, Eaves C, Jones S, Holt R, Hirst M, Hoodless PA, Marra MA.

Genome Res. 2007 Jan;17(1):108-16.

9.

A large quantity of novel human antisense transcripts detected by LongSAGE.

Ge X, Wu Q, Jung YC, Chen J, Wang SM.

Bioinformatics. 2006 Oct 15;22(20):2475-9.

10.

Virtual-SAGE: a new approach to EST data analysis.

Poroyko V, Calugaru V, Fredricksen M, Bohnert HJ.

DNA Res. 2004 Apr 30;11(2):145-52.

11.

Serial analysis of gene expression.

Hu M, Polyak K.

Nat Protoc. 2006;1(4):1743-60.

PMID:
17487157
13.
14.

SAGE and LongSAGE.

Høgh AL, Nielsen KL.

Methods Mol Biol. 2008;387:3-24.

PMID:
18287619
15.

WEBSAGE: a web tool for visual analysis of differentially expressed human SAGE tags.

Pylouster J, Sénamaud-Beaufort C, Saison-Behmoaras TE.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W693-5.

16.

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O.

BMC Genomics. 2008 Sep 16;9:418. doi: 10.1186/1471-2164-9-418.

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19.

Serial Analysis of Gene Expression (SAGE): 13 years of application in research.

Anisimov SV.

Curr Pharm Biotechnol. 2008 Oct;9(5):338-50. Review.

PMID:
18855686
20.

POWER_SAGE: comparing statistical tests for SAGE experiments.

Man MZ, Wang X, Wang Y.

Bioinformatics. 2000 Nov;16(11):953-9.

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