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Items: 1 to 20 of 127

1.

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

Rodionov DA, De Ingeniis J, Mancini C, Cimadamore F, Zhang H, Osterman AL, Raffaelli N.

Nucleic Acids Res. 2008 Apr;36(6):2047-59. doi: 10.1093/nar/gkn047.

2.

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL.

Nucleic Acids Res. 2008 Apr;36(6):2032-46. doi: 10.1093/nar/gkn046.

3.

Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism.

Huang N, De Ingeniis J, Galeazzi L, Mancini C, Korostelev YD, Rakhmaninova AB, Gelfand MS, Rodionov DA, Raffaelli N, Zhang H.

Structure. 2009 Jul 15;17(7):939-51. doi: 10.1016/j.str.2009.05.012.

4.

Key role of an ADP - ribose - dependent transcriptional regulator of NAD metabolism for fitness and virulence of Pseudomonas aeruginosa.

Okon E, Dethlefsen S, Pelnikevich A, Barneveld AV, Munder A, Tümmler B.

Int J Med Microbiol. 2017 Jan;307(1):83-94. doi: 10.1016/j.ijmm.2016.09.007.

PMID:
27865623
5.

Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.

Kazanov MD, Li X, Gelfand MS, Osterman AL, Rodionov DA.

Nucleic Acids Res. 2013 Jan;41(2):790-803. doi: 10.1093/nar/gks1184.

6.

A novel transcriptional regulator of L-arabinose utilization in human gut bacteria.

Chang C, Tesar C, Li X, Kim Y, Rodionov DA, Joachimiak A.

Nucleic Acids Res. 2015 Dec 2;43(21):10546-59. doi: 10.1093/nar/gkv1005.

7.

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S3. doi: 10.1186/1471-2164-12-S1-S3.

8.

A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea.

Rodionov DA, Leyn SA, Li X, Rodionova IA.

J Bacteriol. 2017 Jan 30;199(4). pii: e00743-16. doi: 10.1128/JB.00743-16.

PMID:
27920295
9.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota.

Leyn SA, Rodionova IA, Li X, Rodionov DA.

J Bacteriol. 2015 Jul;197(14):2383-91. doi: 10.1128/JB.00249-15.

10.

Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships.

Rigali S, Schlicht M, Hoskisson P, Nothaft H, Merzbacher M, Joris B, Titgemeyer F.

Nucleic Acids Res. 2004 Jun 24;32(11):3418-26.

12.

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks.

Rodionov DA, Dubchak IL, Arkin AP, Alm EJ, Gelfand MS.

PLoS Comput Biol. 2005 Oct;1(5):e55.

13.

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

Suvorova IA, Tutukina MN, Ravcheev DA, Rodionov DA, Ozoline ON, Gelfand MS.

J Bacteriol. 2011 Aug;193(15):3956-63. doi: 10.1128/JB.00277-11.

14.
15.

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex.

Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA.

J Bacteriol. 2012 Mar;194(5):1145-57. doi: 10.1128/JB.06412-11.

16.

Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.

Zhang L, Nie X, Ravcheev DA, Rodionov DA, Sheng J, Gu Y, Yang S, Jiang W, Yang C.

J Bacteriol. 2014 Nov;196(22):3949-63. doi: 10.1128/JB.02037-14.

17.

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.

Sun EI, Leyn SA, Kazanov MD, Saier MH Jr, Novichkov PS, Rodionov DA.

BMC Genomics. 2013 Sep 2;14:597. doi: 10.1186/1471-2164-14-597.

18.

The Lrp family of transcriptional regulators.

Brinkman AB, Ettema TJ, de Vos WM, van der Oost J.

Mol Microbiol. 2003 Apr;48(2):287-94. Review.

19.

DNA-binding specificity of AdpA, a transcriptional activator in the A-factor regulatory cascade in Streptomyces griseus.

Yamazaki H, Tomono A, Ohnishi Y, Horinouchi S.

Mol Microbiol. 2004 Jul;53(2):555-72.

20.

Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.

Leyn SA, Kazanov MD, Sernova NV, Ermakova EO, Novichkov PS, Rodionov DA.

J Bacteriol. 2013 Jun;195(11):2463-73. doi: 10.1128/JB.00140-13.

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