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Items: 1 to 20 of 101

1.

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.

Segura D, Mahadevan R, Juárez K, Lovley DR.

PLoS Comput Biol. 2008 Feb;4(2):e36. doi: 10.1371/journal.pcbi.0040036. Erratum in: PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/67743d4d-2993-4d0c-951b-3f11ce65a8b4. PLoS Comput Biol. 2008 Feb;4(2):e36.

2.

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.

3.

Geobacter sulfurreducens strain engineered for increased rates of respiration.

Izallalen M, Mahadevan R, Burgard A, Postier B, Didonato R Jr, Sun J, Schilling CH, Lovley DR.

Metab Eng. 2008 Sep;10(5):267-75. doi: 10.1016/j.ymben.2008.06.005. Epub 2008 Jun 27.

PMID:
18644460
4.

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.

Appl Environ Microbiol. 2006 Feb;72(2):1558-68.

5.

The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.

Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.

BMC Microbiol. 2009 May 27;9:109. doi: 10.1186/1471-2180-9-109.

6.

Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation.

Yang TH, Coppi MV, Lovley DR, Sun J.

Microb Cell Fact. 2010 Nov 22;9:90. doi: 10.1186/1475-2859-9-90.

7.

Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.

Ueki T, Lovley DR.

Nucleic Acids Res. 2010 Jan;38(3):810-21. doi: 10.1093/nar/gkp1085. Epub 2009 Nov 25.

8.

Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.

Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B, Adkins RM, Lovley DR.

BMC Genomics. 2009 Jul 22;10:331. doi: 10.1186/1471-2164-10-331.

9.

The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism.

Embree M, Qiu Y, Shieu W, Nagarajan H, O'Neil R, Lovley D, Zengler K.

Appl Environ Microbiol. 2014 May;80(9):2918-27. doi: 10.1128/AEM.03916-13. Epub 2014 Feb 28.

10.

Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.

Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Methé BA, Krushkal J.

OMICS. 2008 Mar;12(1):33-59. doi: 10.1089/omi.2007.0043.

PMID:
18266557
11.

Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens.

Risso C, Van Dien SJ, Orloff A, Lovley DR, Coppi MV.

J Bacteriol. 2008 Apr;190(7):2266-74. doi: 10.1128/JB.01841-07. Epub 2008 Feb 1.

12.

DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.

Núñez C, Esteve-Núñez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Methé BA.

J Bacteriol. 2006 Apr;188(8):2792-800.

14.

Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.

Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.

Microb Biotechnol. 2009 Mar;2(2):274-86. doi: 10.1111/j.1751-7915.2009.00087.x.

15.

The RpoS sigma factor in the dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens.

Núñez C, Adams L, Childers S, Lovley DR.

J Bacteriol. 2004 Aug;186(16):5543-6.

16.

Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.

Gene. 2006 Dec 15;384:73-95. Epub 2006 Jul 20.

PMID:
17014972
17.

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.

Mahadevan R, Palsson BØ, Lovley DR.

Nat Rev Microbiol. 2011 Jan;9(1):39-50. doi: 10.1038/nrmicro2456. Epub 2010 Dec 6. Review. Erratum in: Nat Rev Microbiol. 2011 Mar;9(3):222.

PMID:
21132020
18.

Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.

DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR.

J Bacteriol. 2006 Dec;188(24):8469-78. Epub 2006 Oct 13.

19.

The degree of redundancy in metabolic genes is linked to mode of metabolism.

Mahadevan R, Lovley DR.

Biophys J. 2008 Feb 15;94(4):1216-20. Epub 2007 Nov 2.

20.

Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.

Microbiology. 2008 May;154(Pt 5):1422-35. doi: 10.1099/mic.0.2007/014365-0.

PMID:
18451051

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