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Items: 1 to 20 of 121

1.

Comparing sequence and expression for predicting microRNA targets using GenMiR3.

Huang JC, Frey BJ, Morris QD.

Pac Symp Biocomput. 2008:52-63.

2.
3.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.

PMID:
16356665
4.

Fast and effective prediction of microRNA/target duplexes.

Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R.

RNA. 2004 Oct;10(10):1507-17.

5.

MicroRNA target finding by comparative genomics.

Friedman RC, Burge CB.

Methods Mol Biol. 2014;1097:457-76. doi: 10.1007/978-1-62703-709-9_21. Review.

PMID:
24639172
6.

Prediction of human microRNA targets.

John B, Sander C, Marks DS.

Methods Mol Biol. 2006;342:101-13. Review.

PMID:
16957370
7.

Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines.

Ruike Y, Ichimura A, Tsuchiya S, Shimizu K, Kunimoto R, Okuno Y, Tsujimoto G.

J Hum Genet. 2008;53(6):515-23. doi: 10.1007/s10038-008-0279-x. Epub 2008 May 10.

PMID:
18465083
8.

Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data.

Wang YP, Li KB.

BMC Genomics. 2009 May 12;10:218. doi: 10.1186/1471-2164-10-218.

9.

Predicting the fate of microRNA target genes based on sequence features.

Pei Y, Wang X, Zhang X.

J Theor Biol. 2009 Nov 7;261(1):17-22. doi: 10.1016/j.jtbi.2009.07.022. Epub 2009 Jul 28.

PMID:
19643113
10.

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C.

Nucleic Acids Res. 2010 Apr;38(7):e97. doi: 10.1093/nar/gkp1239. Epub 2010 Jan 13.

11.

Solution structure of miRNA:mRNA complex.

Cevec M, Plavec J.

Methods Mol Biol. 2010;667:251-65. doi: 10.1007/978-1-60761-811-9_17.

PMID:
20827539
12.

Integrating genomic data to predict transcription factor binding.

Holloway DT, Kon M, DeLisi C.

Genome Inform. 2005;16(1):83-94.

PMID:
16362910
13.

microRNA target predictions in animals.

Rajewsky N.

Nat Genet. 2006 Jun;38 Suppl:S8-13. Review.

PMID:
16736023
14.

The Limitations of Existing Approaches in Improving MicroRNA Target Prediction Accuracy.

Loganantharaj R, Randall TA.

Methods Mol Biol. 2017;1617:133-158. doi: 10.1007/978-1-4939-7046-9_10.

PMID:
28540682
15.

A guide through present computational approaches for the identification of mammalian microRNA targets.

Sethupathy P, Megraw M, Hatzigeorgiou AG.

Nat Methods. 2006 Nov;3(11):881-6.

PMID:
17060911
16.

Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features.

Song X, Cheng L, Zhou T, Guo X, Zhang X, Chen YP, Han P, Sha J.

Comput Biol Med. 2012 Jan;42(1):1-7. doi: 10.1016/j.compbiomed.2011.10.001. Epub 2011 Oct 29.

PMID:
22041293
17.

Prediction of microRNA targets.

Rehmsmeier M.

Methods Mol Biol. 2006;342:87-99.

PMID:
16957369
18.

The role of site accessibility in microRNA target recognition.

Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E.

Nat Genet. 2007 Oct;39(10):1278-84. Epub 2007 Sep 23.

PMID:
17893677
19.

CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y.

Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22.

20.

Efficient use of accessibility in microRNA target prediction.

Marín RM, Vanícek J.

Nucleic Acids Res. 2011 Jan;39(1):19-29. doi: 10.1093/nar/gkq768. Epub 2010 Aug 30.

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