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Items: 1 to 20 of 211

1.

Median absolute deviation to improve hit selection for genome-scale RNAi screens.

Chung N, Zhang XD, Kreamer A, Locco L, Kuan PF, Bartz S, Linsley PS, Ferrer M, Strulovici B.

J Biomol Screen. 2008 Feb;13(2):149-58. doi: 10.1177/1087057107312035. Epub 2008 Jan 23.

PMID:
18216396
2.

An efficient and fully automated high-throughput transfection method for genome-scale siRNA screens.

Chung N, Locco L, Huff KW, Bartz S, Linsley PS, Ferrer M, Strulovici B.

J Biomol Screen. 2008 Feb;13(2):142-8. doi: 10.1177/1087057107312032. Epub 2008 Jan 23.

PMID:
18216392
3.

Robust statistical methods for hit selection in RNA interference high-throughput screening experiments.

Zhang XD, Yang XC, Chung N, Gates A, Stec E, Kunapuli P, Holder DJ, Ferrer M, Espeseth AS.

Pharmacogenomics. 2006 Apr;7(3):299-309.

PMID:
16610941
4.

The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens.

Zhang XD, Lacson R, Yang R, Marine SD, McCampbell A, Toolan DM, Hare TR, Kajdas J, Berger JP, Holder DJ, Heyse JF, Ferrer M.

J Biomol Screen. 2010 Oct;15(9):1123-31. doi: 10.1177/1087057110381919. Epub 2010 Sep 17.

PMID:
20852024
5.

Error rates and powers in genome-scale RNAi screens.

Zhang XD, Marine SD, Ferrer M.

J Biomol Screen. 2009 Mar;14(3):230-8. doi: 10.1177/1087057109331475. Epub 2009 Feb 11.

PMID:
19211781
6.

An effective method for controlling false discovery and false nondiscovery rates in genome-scale RNAi screens.

Zhang XD.

J Biomol Screen. 2010 Oct;15(9):1116-22. doi: 10.1177/1087057110381783. Epub 2010 Sep 20.

PMID:
20855561
7.

The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments.

Zhang XD, Ferrer M, Espeseth AS, Marine SD, Stec EM, Crackower MA, Holder DJ, Heyse JF, Strulovici B.

J Biomol Screen. 2007 Jun;12(4):497-509. Epub 2007 Apr 13.

PMID:
17435171
9.

Designing, optimizing, and implementing high-throughput siRNA genomic screening with glioma cells for the discovery of survival genes and novel drug targets.

Thaker NG, McDonald PR, Zhang F, Kitchens CA, Shun TY, Pollack IF, Lazo JS.

J Neurosci Methods. 2010 Jan 15;185(2):204-12. doi: 10.1016/j.jneumeth.2009.09.023. Epub 2009 Sep 25.

PMID:
19782703
10.

Oncology studies using siRNA libraries: the dawn of RNAi-based genomics.

Sachse C, Echeverri CJ.

Oncogene. 2004 Nov 1;23(51):8384-91. Review.

PMID:
15517020
11.

High-throughput RNAi screening in mammalian cells with esiRNAs.

Theis M, Buchholz F.

Methods. 2011 Apr;53(4):424-9. doi: 10.1016/j.ymeth.2010.12.021. Epub 2010 Dec 23.

PMID:
21185384
12.

Common seed analysis to identify off-target effects in siRNA screens.

Marine S, Bahl A, Ferrer M, Buehler E.

J Biomol Screen. 2012 Mar;17(3):370-8. doi: 10.1177/1087057111427348. Epub 2011 Nov 15.

PMID:
22086724
13.

RNAi microarray analysis in cultured mammalian cells.

Mousses S, Caplen NJ, Cornelison R, Weaver D, Basik M, Hautaniemi S, Elkahloun AG, Lotufo RA, Choudary A, Dougherty ER, Suh E, Kallioniemi O.

Genome Res. 2003 Oct;13(10):2341-7.

14.

Identifying HIV-1 host cell factors by genome-scale RNAi screening.

Pache L, K├Ânig R, Chanda SK.

Methods. 2011 Jan;53(1):3-12. doi: 10.1016/j.ymeth.2010.07.009. Epub 2010 Jul 21. Review.

PMID:
20654720
15.

High-throughput RNAi screening for the identification of novel targets.

Henderson MC, Azorsa DO.

Methods Mol Biol. 2013;986:89-95. doi: 10.1007/978-1-62703-311-4_6.

PMID:
23436407
16.

Functional genomics using high-throughput RNA interference.

Vanhecke D, Janitz M.

Drug Discov Today. 2005 Feb 1;10(3):205-12. Review.

PMID:
15708535
17.

High-throughput selection of effective RNAi probes for gene silencing.

Kumar R, Conklin DS, Mittal V.

Genome Res. 2003 Oct;13(10):2333-40.

18.

Enhanced HTS hit selection via a local hit rate analysis.

Posner BA, Xi H, Mills JE.

J Chem Inf Model. 2009 Oct;49(10):2202-10. doi: 10.1021/ci900113d.

PMID:
19795815
19.

Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs.

Kittler R, Buchholz F.

Cell Cycle. 2005 Apr;4(4):564-7. Epub 2005 Apr 19. Review.

PMID:
15876870
20.

High-throughput RNA interference in functional genomics.

Janitz M, Vanhecke D, Lehrach H.

Handb Exp Pharmacol. 2006;(173):97-104. Review.

PMID:
16594612

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