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Items: 1 to 20 of 85

1.

The ModFOLD server for the quality assessment of protein structural models.

McGuffin LJ.

Bioinformatics. 2008 Feb 15;24(4):586-7. doi: 10.1093/bioinformatics/btn014. Epub 2008 Jan 9.

PMID:
18184684
2.

Prediction of global and local model quality in CASP8 using the ModFOLD server.

McGuffin LJ.

Proteins. 2009;77 Suppl 9:185-90. doi: 10.1002/prot.22491.

PMID:
19585661
3.

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

McGuffin LJ, Roche DB.

Bioinformatics. 2010 Jan 15;26(2):182-8. doi: 10.1093/bioinformatics/btp629. Epub 2009 Nov 6.

PMID:
19897565
4.
5.

Assessing the quality of modelled 3D protein structures using the ModFOLD server.

Roche DB, Buenavista MT, McGuffin LJ.

Methods Mol Biol. 2014;1137:83-103. doi: 10.1007/978-1-4939-0366-5_7.

PMID:
24573476
6.

Quality assessment of protein model-structures using evolutionary conservation.

Kalman M, Ben-Tal N.

Bioinformatics. 2010 May 15;26(10):1299-307. doi: 10.1093/bioinformatics/btq114. Epub 2010 Apr 12.

7.

The ModFOLD4 server for the quality assessment of 3D protein models.

McGuffin LJ, Buenavista MT, Roche DB.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W368-72. doi: 10.1093/nar/gkt294. Epub 2013 Apr 25.

8.

Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method.

McGuffin LJ, Roche DB.

Proteins. 2011;79 Suppl 10:137-46. doi: 10.1002/prot.23120. Epub 2011 Aug 30.

PMID:
22069035
9.

Pcons.net: protein structure prediction meta server.

Wallner B, Larsson P, Elofsson A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W369-74. Epub 2007 Jun 21.

10.

DOMAC: an accurate, hybrid protein domain prediction server.

Cheng J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.

11.

I-TASSER server for protein 3D structure prediction.

Zhang Y.

BMC Bioinformatics. 2008 Jan 23;9:40. doi: 10.1186/1471-2105-9-40.

12.

Assessment of global and local model quality in CASP8 using Pcons and ProQ.

Larsson P, Skwark MJ, Wallner B, Elofsson A.

Proteins. 2009;77 Suppl 9:167-72. doi: 10.1002/prot.22476.

PMID:
19544566
13.

M4T: a comparative protein structure modeling server.

Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W363-8. Epub 2007 May 21.

14.

Neural network pairwise interaction fields for protein model quality assessment and ab initio protein folding.

Martin AJ, Mirabello C, Pollastri G.

Curr Protein Pept Sci. 2011 Sep;12(6):549-62.

PMID:
21787307
15.

Automated server predictions in CASP7.

Battey JN, Kopp J, Bordoli L, Read RJ, Clarke ND, Schwede T.

Proteins. 2007;69 Suppl 8:68-82.

PMID:
17894354
16.

JPred: a consensus secondary structure prediction server.

Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ.

Bioinformatics. 1998;14(10):892-3.

PMID:
9927721
17.

PROMALS web server for accurate multiple protein sequence alignments.

Pei J, Kim BH, Tang M, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.

18.

Prediction of global and local model quality in CASP7 using Pcons and ProQ.

Wallner B, Elofsson A.

Proteins. 2007;69 Suppl 8:184-93.

PMID:
17894353
19.

FAST: a novel protein structure alignment algorithm.

Zhu J, Weng Z.

Proteins. 2005 Feb 15;58(3):618-27.

PMID:
15609341
20.

HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif.

Ferrer-Costa C, Shanahan HP, Jones S, Thornton JM.

Bioinformatics. 2005 Sep 15;21(18):3679-80. Epub 2005 Jul 19.

PMID:
16030074

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