Similar articles for PMID: 18178374

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1932	1
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1

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Faulkner GJ, Forrest AR, Chalk AM, Schroder K, Hayashizaki Y, Carninci P, Hume DA, Grimmond SM. Faulkner GJ, et al. Genomics. 2008 Mar;91(3):281-8. doi: 10.1016/j.ygeno.2007.11.003. Genomics. 2008. PMID: 18178374 Free article.

2

Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.

de Hoon M, Hayashizaki Y. de Hoon M, et al. Biotechniques. 2008 Apr;44(5):627-8, 630, 632. doi: 10.2144/000112802. Biotechniques. 2008. PMID: 18474037 Free article. Review.

3

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.

Maeda N, Nishiyori H, Nakamura M, Kawazu C, Murata M, Sano H, Hayashida K, Fukuda S, Tagami M, Hasegawa A, Murakami K, Schroder K, Irvine K, Hume D, Hayashizaki Y, Carninci P, Suzuki H. Maeda N, et al. Biotechniques. 2008 Jul;45(1):95-7. doi: 10.2144/000112814. Biotechniques. 2008. PMID: 18611171 Free article.

4

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

Kawaji H, Kasukawa T, Fukuda S, Katayama S, Kai C, Kawai J, Carninci P, Hayashizaki Y. Kawaji H, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D632-6. doi: 10.1093/nar/gkj034. Nucleic Acids Res. 2006. PMID: 16381948 Free PMC article.

5

Transcriptome annotation using tandem SAGE tags.

Rivals E, Boureux A, Lejeune M, Ottones F, Pérez OP, Tarhio J, Pierrat F, Ruffle F, Commes T, Marti J. Rivals E, et al. Nucleic Acids Res. 2007;35(17):e108. doi: 10.1093/nar/gkm495. Epub 2007 Aug 20. Nucleic Acids Res. 2007. PMID: 17709346 Free PMC article.

6

Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.

Kodzius R, Matsumura Y, Kasukawa T, Shimokawa K, Fukuda S, Shiraki T, Nakamura M, Arakawa T, Sasaki D, Kawai J, Harbers M, Carninci P, Hayashizaki Y. Kodzius R, et al. FEBS Lett. 2004 Feb 13;559(1-3):22-6. doi: 10.1016/S0014-5793(04)00018-3. FEBS Lett. 2004. PMID: 14960301 Free article.

7

[Cap analysis gene expression: CAGE].

Nakamura M, Carninci P. Nakamura M, et al. Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2688-93. Tanpakushitsu Kakusan Koso. 2004. PMID: 15669240 Review. Japanese. No abstract available.

8

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y. Shiraki T, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81. doi: 10.1073/pnas.2136655100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663149 Free PMC article.

9

[Determination of transcription start sites: CAGE & GIS tag sequences].

Shinji K. Shinji K. Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2701-3. Tanpakushitsu Kakusan Koso. 2004. PMID: 15669242 Review. Japanese. No abstract available.

10

Tag-based approaches for transcriptome research and genome annotation.

Harbers M, Carninci P. Harbers M, et al. Nat Methods. 2005 Jul;2(7):495-502. doi: 10.1038/nmeth768. Nat Methods. 2005. PMID: 15973418 Review.

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