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Items: 1 to 20 of 254

1.

Preliminary dielectric measurement and analysis protocol for determining the melting temperature and binding energy of short sequences of DNA in solution.

Spillman WB Jr, Asmatulu R, Jullian CF, Geist B, Claus RO, Robertson JL.

Biotechnol J. 2008 Feb;3(2):252-63. Erratum in: Biotechnol J. 2008 Feb;3(2):273.

PMID:
18034436
2.

Counterion association with native and denatured nucleic acids: an experimental approach.

Völker J, Klump HH, Manning GS, Breslauer KJ.

J Mol Biol. 2001 Jul 27;310(5):1011-25.

PMID:
11501992
3.

Sharp melting of polymer-DNA hybrids: an associative phase separation approach.

Kudlay A, Gibbs JM, Schatz GC, Nguyen ST, de la Cruz MO.

J Phys Chem B. 2007 Feb 22;111(7):1610-9. Epub 2007 Jan 26.

PMID:
17256893
4.

Molecular thermodynamic model for DNA melting in ionic and crowded solutions.

Liu Y, Kermanpour F, Liu HL, Hu Y, Shang YZ, Sandler SI, Jiang JW.

J Phys Chem B. 2010 Aug 5;114(30):9905-11. doi: 10.1021/jp104121q.

PMID:
20666530
5.

A fractional programming approach to efficient DNA melting temperature calculation.

Leber M, Kaderali L, Schönhuth A, Schrader R.

Bioinformatics. 2005 May 15;21(10):2375-82. Epub 2005 Mar 15.

PMID:
15769839
6.

DNA melting in aggregates: impeded or facilitated?

Cherstvy AG, Kornyshev AA.

J Phys Chem B. 2005 Jul 7;109(26):13024-9.

PMID:
16852616
7.

Influence of base sequence on the stability of the double helix of DNA.

Belintsev BN, Vologodskii AV, Frank-Kamenetskii MD.

Mol Biol (Mosk). 1976 Jul-Aug;10(4):629-33.

PMID:
1023045
8.

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.

Owczarzy R, You Y, Moreira BG, Manthey JA, Huang L, Behlke MA, Walder JA.

Biochemistry. 2004 Mar 30;43(12):3537-54.

PMID:
15035624
9.

Electrophoretic mobility is a reporter of hairpin structure in single-stranded DNA oligomers.

Stellwagen E, Abdulla A, Dong Q, Stellwagen NC.

Biochemistry. 2007 Sep 25;46(38):10931-41. Epub 2007 Sep 1.

PMID:
17764160
10.

dnaMATE: a consensus melting temperature prediction server for short DNA sequences.

Panjkovich A, Norambuena T, Melo F.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W570-2.

12.

Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.

Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.

Biopolymers. 2006 Jun 15;82(3):199-221.

PMID:
16345003
13.
14.

[The influence of low-energy millimeter electromagnetic waves on the stability of DNA molecules in solution].

Babaian, Markarian ASh, Kalantarian VP, Kazarian RS, Parsadanian MA, Vardevanian PO.

Biofizika. 2007 Mar-Apr;52(2):382-4. Russian.

PMID:
17477071
15.

Determination of DNA melting temperatures in diffusion-generated chemical gradients.

Liedl T, Simmel FC.

Anal Chem. 2007 Jul 15;79(14):5212-6. Epub 2007 Jun 12.

PMID:
17563115
16.

Spectroscopic and calorimetric studies on the DNA recognition of pyrrolo[2,1-c][1,4]benzodiazepine hybrids.

Rettig M, Kamal A, Ramu R, Mikolajczak J, Weisz K.

Bioorg Med Chem. 2009 Jan 15;17(2):919-28. doi: 10.1016/j.bmc.2008.11.033. Epub 2008 Nov 19.

PMID:
19056283
17.

Melting temperatures of nucleic acids: discrepancies in analysis.

Owczarzy R.

Biophys Chem. 2005 Oct 3;117(3):207-15.

PMID:
15963627
18.

DNA folding and melting observed in real time redefine the energy landscape.

Ma H, Wan C, Wu A, Zewail AH.

Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):712-6. Epub 2007 Jan 10.

19.

Mixture models for analysis of melting temperature data.

Nellåker C, Uhrzander F, Tyrcha J, Karlsson H.

BMC Bioinformatics. 2008 Sep 11;9:370. doi: 10.1186/1471-2105-9-370.

20.

Thermal melting studies of ligand DNA interactions.

Guédin A, Lacroix L, Mergny JL.

Methods Mol Biol. 2010;613:25-35. doi: 10.1007/978-1-60327-418-0_2.

PMID:
19997875

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