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Items: 1 to 20 of 538

1.

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.

Chiang T, Li N, Orchard S, Kerrien S, Hermjakob H, Gentleman R, Huber W.

Bioinformatics. 2008 Apr 15;24(8):1100-1. Epub 2007 Nov 7.

PMID:
17989096
2.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

3.

A query language for biological networks.

Leser U.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii33-9.

PMID:
16204121
4.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.

PMID:
15572471
5.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

6.

Using GOstats to test gene lists for GO term association.

Falcon S, Gentleman R.

Bioinformatics. 2007 Jan 15;23(2):257-8. Epub 2006 Nov 10.

PMID:
17098774
7.

FPV: fast protein visualization using Java 3D.

Can T, Wang Y, Wang YF, Su J.

Bioinformatics. 2003 May 22;19(8):913-22.

PMID:
12761052
8.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

9.

Biomolecular interaction network database.

Gilbert D.

Brief Bioinform. 2005 Jun;6(2):194-8. Review.

PMID:
15975228
10.

The design of Jemboss: a graphical user interface to EMBOSS.

Carver T, Bleasby A.

Bioinformatics. 2003 Sep 22;19(14):1837-43.

PMID:
14512356
11.

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Zhang JD, Wiemann S.

Bioinformatics. 2009 Jun 1;25(11):1470-1. doi: 10.1093/bioinformatics/btp167. Epub 2009 Mar 23.

12.

PIMWalker: visualising protein interaction networks using the HUPO PSI molecular interaction format.

Meil A, Durand P, Wojcik J.

Appl Bioinformatics. 2005;4(2):137-9.

PMID:
16128615
13.

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

14.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
15.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

16.

Online predicted human interaction database.

Brown KR, Jurisica I.

Bioinformatics. 2005 May 1;21(9):2076-82. Epub 2005 Jan 18.

PMID:
15657099
17.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

18.

Biskit--a software platform for structural bioinformatics.

Gr├╝nberg R, Nilges M, Leckner J.

Bioinformatics. 2007 Mar 15;23(6):769-70. Epub 2007 Jan 18.

PMID:
17237072
19.

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Salwinski L, Eisenberg D.

Bioinformatics. 2007 Aug 15;23(16):2193-5. Epub 2007 Jun 6.

PMID:
17553858
20.

Visualisation and navigation methods for typed protein-protein interaction networks.

Friedrich C, Schreiber F.

Appl Bioinformatics. 2003;2(3 Suppl):S19-24.

PMID:
15130812

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