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Items: 1 to 20 of 130

1.

Pepitope: epitope mapping from affinity-selected peptides.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T.

Bioinformatics. 2007 Dec 1;23(23):3244-6. Epub 2007 Oct 31.

PMID:
17977889
2.

Discontinuous epitope prediction based on mimotope analysis.

Moreau V, Granier C, Villard S, Laune D, Molina F.

Bioinformatics. 2006 May 1;22(9):1088-95. Epub 2006 Jan 24.

PMID:
16434442
3.

Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm.

Mayrose I, Shlomi T, Rubinstein ND, Gershoni JM, Ruppin E, Sharan R, Pupko T.

Nucleic Acids Res. 2007;35(1):69-78. Epub 2006 Dec 6.

4.

Mapping a neutralizing epitope on the SARS coronavirus spike protein: computational prediction based on affinity-selected peptides.

Tarnovitski N, Matthews LJ, Sui J, Gershoni JM, Marasco WA.

J Mol Biol. 2006 May 26;359(1):190-201. Epub 2006 Mar 22.

PMID:
16630634
5.

The MEPS server for identifying protein conformational epitopes.

Castrignanò T, De Meo PD, Carrabino D, Orsini M, Floris M, Tramontano A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S6.

6.

The localization of two mimic epitopes of lipopolysaccharide binding protein and the preparation of their tandem multiple antigen peptide.

Feng YK, Yang QH, Liu YS, Xu JC, Qian GS, Wang YH.

J Immunol Methods. 2010 Oct 31;362(1-2):60-9. doi: 10.1016/j.jim.2010.09.003. Epub 2010 Sep 15.

PMID:
20833181
7.

Learning MHC I--peptide binding.

Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O.

Bioinformatics. 2006 Jul 15;22(14):e227-35.

PMID:
16873476
8.

Exploring antibody recognition of sequence space through random-sequence peptide microarrays.

Halperin RF, Stafford P, Johnston SA.

Mol Cell Proteomics. 2011 Mar;10(3):M110.000786. doi: 10.1074/mcp.M110.000786. Epub 2010 Nov 9.

9.

Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm.

Bublil EM, Freund NT, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein ND, Pupko T, Gershoni JM.

Proteins. 2007 Jul 1;68(1):294-304.

PMID:
17427229
10.

3D-Epitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins.

Schreiber A, Humbert M, Benz A, Dietrich U.

J Comput Chem. 2005 Jul 15;26(9):879-87.

PMID:
15834923
11.

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.

Tung CW, Ho SY.

Bioinformatics. 2007 Apr 15;23(8):942-9. Epub 2007 Mar 24.

PMID:
17384427
12.

EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology.

Reche PA, Zhang H, Glutting JP, Reinherz EL.

Bioinformatics. 2005 May 1;21(9):2140-1. Epub 2005 Jan 18.

PMID:
15657103
13.

Epitopia: a web-server for predicting B-cell epitopes.

Rubinstein ND, Mayrose I, Martz E, Pupko T.

BMC Bioinformatics. 2009 Sep 14;10:287. doi: 10.1186/1471-2105-10-287.

14.

CEP: a conformational epitope prediction server.

Kulkarni-Kale U, Bhosle S, Kolaskar AS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W168-71.

15.

A mathematical framework for the selection of an optimal set of peptides for epitope-based vaccines.

Toussaint NC, Dönnes P, Kohlbacher O.

PLoS Comput Biol. 2008 Dec;4(12):e1000246. doi: 10.1371/journal.pcbi.1000246. Epub 2008 Dec 26.

16.

ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Ponomarenko J, Bui HH, Li W, Fusseder N, Bourne PE, Sette A, Peters B.

BMC Bioinformatics. 2008 Dec 2;9:514. doi: 10.1186/1471-2105-9-514.

17.

BlockLogo: visualization of peptide and sequence motif conservation.

Olsen LR, Kudahl UJ, Simon C, Sun J, Schönbach C, Reinherz EL, Zhang GL, Brusic V.

J Immunol Methods. 2013 Dec 31;400-401:37-44. doi: 10.1016/j.jim.2013.08.014. Epub 2013 Aug 31.

18.

A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins.

Mumey BM, Bailey BW, Kirkpatrick B, Jesaitis AJ, Angel T, Dratz EA.

J Comput Biol. 2003;10(3-4):555-67.

PMID:
12935344
19.

Selection of protein epitopes for antibody production.

Lindskog M, Rockberg J, Uhlén M, Sterky F.

Biotechniques. 2005 May;38(5):723-7.

20.

Methods and protocols for prediction of immunogenic epitopes.

Tong JC, Tan TW, Ranganathan S.

Brief Bioinform. 2007 Mar;8(2):96-108. Epub 2006 Oct 31. Review.

PMID:
17077136

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