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Items: 1 to 20 of 57

1.

A guide to biochemical systems modeling of sphingolipids for the biochemist.

Sims KJ, Alvarez-Vasquez F, Voit EO, Hannun YA.

Methods Enzymol. 2007;432:319-50.

PMID:
17954223
2.

Estimating parameters for generalized mass action models using constraint propagation.

Tucker W, Kutalik Z, Moulton V.

Math Biosci. 2007 Aug;208(2):607-20. Epub 2006 Dec 8.

PMID:
17306307
3.

A systems approach demonstrating sphingolipid-dependent transcription in stress responses.

Wilder AJ, Cowart LA.

Methods Mol Biol. 2008;477:369-81. doi: 10.1007/978-1-60327-517-0_28.

PMID:
19082961
4.

Hybrid modeling in biochemical systems theory by means of functional petri nets.

Wu J, Voit E.

J Bioinform Comput Biol. 2009 Feb;7(1):107-34.

PMID:
19226663
5.

Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models.

Alvarez-Vasquez F, Sims KJ, Hannun YA, Voit EO.

J Theor Biol. 2004 Feb 7;226(3):265-91.

PMID:
14643642
6.
7.

Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Ejsing CS, Sampaio JL, Surendranath V, Duchoslav E, Ekroos K, Klemm RW, Simons K, Shevchenko A.

Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2136-41. doi: 10.1073/pnas.0811700106. Epub 2009 Jan 27.

8.

Steps of modeling complex biological systems.

Voit EO, Qi Z, Miller GW.

Pharmacopsychiatry. 2008 Sep;41 Suppl 1:S78-84. doi: 10.1055/s-2008-1080911. Review.

PMID:
18756424
9.

Challenges for the identification of biological systems from in vivo time series data.

Voit EO, Marino S, Lall R.

In Silico Biol. 2005;5(2):83-92.

PMID:
15972008
10.

Coordination of the dynamics of yeast sphingolipid metabolism during the diauxic shift.

Alvarez-Vasquez F, Sims KJ, Voit EO, Hannun YA.

Theor Biol Med Model. 2007 Oct 31;4:42.

11.

ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists.

Helikar T, Rogers JA.

BMC Syst Biol. 2009 Jun 6;3:58. doi: 10.1186/1752-0509-3-58.

12.

Metabolic modeling: a tool of drug discovery in the post-genomic era.

Voit EO.

Drug Discov Today. 2002 Jun 1;7(11):621-8. Review.

PMID:
12047873
13.
14.

A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-based model of Parkinson's disease.

Sass MB, Lorenz AN, Green RL, Coleman RA.

J Neurosci Methods. 2009 Apr 15;178(2):366-77. doi: 10.1016/j.jneumeth.2008.12.014. Epub 2008 Dec 24.

PMID:
19136028
15.

Equation-based models of dynamic biological systems.

Daun S, Rubin J, Vodovotz Y, Clermont G.

J Crit Care. 2008 Dec;23(4):585-94. doi: 10.1016/j.jcrc.2008.02.003. Epub 2008 May 14. Review.

PMID:
19056027
16.

Hybrid modeling in computational neuropsychiatry.

Marin-Sanguino A, Mendoza ER.

Pharmacopsychiatry. 2008 Sep;41 Suppl 1:S85-8. doi: 10.1055/s-2008-1081464. Review.

PMID:
18756425
17.

BioLogic: A mathematical modeling framework for immunologists.

Ta'asan S, Gandlin R.

Methods Mol Biol. 2009;500:429-43. doi: 10.1007/978-1-59745-525-1_14.

PMID:
19399436
18.

The evolution of mathematical immunology.

Louzoun Y.

Immunol Rev. 2007 Apr;216:9-20. Review.

PMID:
17367331
19.
20.

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