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Items: 1 to 20 of 100

1.

Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. Epub 2007 Oct 16.

2.

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS.

Nucleic Acids Res. 2010 Jan;38(Database issue):D699-702. doi: 10.1093/nar/gkp1044. Epub 2009 Nov 24.

3.

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes.

Santos A, Wernersson R, Jensen LJ.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1140-4. doi: 10.1093/nar/gku1092. Epub 2014 Nov 5.

4.

Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast.

Pyne S, Gutman R, Kim CS, Futcher B.

BMC Genomics. 2009 Sep 17;10:440. doi: 10.1186/1471-2164-10-440.

5.

yMGV: a cross-species expression data mining tool.

Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D323-5.

6.

PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information.

Zeng H, Luo L, Zhang W, Zhou J, Li Z, Liu H, Zhu T, Feng X, Zhong Y.

Nucleic Acids Res. 2007 Jan;35(Database issue):D879-82. Epub 2006 Nov 16.

7.

Combined analysis reveals a core set of cycling genes.

Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z.

Genome Biol. 2007;8(7):R146.

8.

Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.

Dupl'áková N, Renák D, Hovanec P, Honysová B, Twell D, Honys D.

BMC Plant Biol. 2007 Jul 23;7:39.

9.

CauloBrowser: A systems biology resource for Caulobacter crescentus.

Lasker K, Schrader JM, Men Y, Marshik T, Dill DL, McAdams HH, Shapiro L.

Nucleic Acids Res. 2016 Jan 4;44(D1):D640-5. doi: 10.1093/nar/gkv1050. Epub 2015 Oct 17.

10.

SCEPTRANS: an online tool for analyzing periodic transcription in yeast.

Kudlicki A, Rowicka M, Otwinowski Z.

Bioinformatics. 2007 Jun 15;23(12):1559-61. Epub 2007 Mar 30.

PMID:
17400726
11.

The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction.

Gattiker A, Niederhauser-Wiederkehr C, Moore J, Hermida L, Primig M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D457-62. Epub 2006 Dec 1.

12.

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.

Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bähler J.

Yeast. 2006 Mar;23(4):261-277. doi: 10.1002/yea.1351.

13.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072
14.

MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters.

Law PJ, Claudel-Renard C, Joubert F, Louw AI, Berger DK.

BMC Genomics. 2008 Feb 28;9:105. doi: 10.1186/1471-2164-9-105.

15.

CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform.

Gagnot S, Tamby JP, Martin-Magniette ML, Bitton F, Taconnat L, Balzergue S, Aubourg S, Renou JP, Lecharny A, Brunaud V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D986-90. Epub 2007 Oct 16.

16.

Tetrahymena Gene Expression Database (TGED): a resource of microarray data and co-expression analyses for Tetrahymena.

Xiong J, Lu X, Lu Y, Zeng H, Yuan D, Feng L, Chang Y, Bowen J, Gorovsky M, Fu C, Miao W.

Sci China Life Sci. 2011 Jan;54(1):65-7. doi: 10.1007/s11427-010-4114-1. Epub 2011 Jan 21.

PMID:
21253873
17.

The BioGRID interaction database: 2013 update.

Chatr-Aryamontri A, Breitkreutz BJ, Heinicke S, Boucher L, Winter A, Stark C, Nixon J, Ramage L, Kolas N, O'Donnell L, Reguly T, Breitkreutz A, Sellam A, Chen D, Chang C, Rust J, Livstone M, Oughtred R, Dolinski K, Tyers M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D816-23. doi: 10.1093/nar/gks1158. Epub 2012 Nov 30.

18.

The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.

Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D578-81.

19.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

20.

The cell cycle DB: a systems biology approach to cell cycle analysis.

Alfieri R, Merelli I, Mosca E, Milanesi L.

Nucleic Acids Res. 2008 Jan;36(Database issue):D641-5. Epub 2007 Dec 26.

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