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Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds.

Parker HG, Kukekova AV, Akey DT, Goldstein O, Kirkness EF, Baysac KC, Mosher DS, Aguirre GD, Acland GM, Ostrander EA.

Genome Res. 2007 Nov;17(11):1562-71. Epub 2007 Oct 4.


Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome.

Goldstein O, Zangerl B, Pearce-Kelling S, Sidjanin DJ, Kijas JW, Felix J, Acland GM, Aguirre GD.

Genomics. 2006 Nov;88(5):541-50. Epub 2006 Jul 20.


Discrepancy in compliance between the clinical and genetic diagnosis of choroidal hypoplasia in Danish Rough Collies and Shetland Sheepdogs.

Fredholm M, Larsen RC, Jönsson M, Söderlund MA, Hardon T, Proschowsky HF.

Anim Genet. 2016 Apr;47(2):250-2. doi: 10.1111/age.12405. Epub 2016 Jan 6.


Comparing power and precision of within-breed and multibreed genome-wide association studies of production traits using whole-genome sequence data for 5 French and Danish dairy cattle breeds.

van den Berg I, Boichard D, Lund MS.

J Dairy Sci. 2016 Nov;99(11):8932-8945. doi: 10.3168/jds.2016-11073. Epub 2016 Aug 24.


Linkage mapping of the primary disease locus for collie eye anomaly.

Lowe JK, Kukekova AV, Kirkness EF, Langlois MC, Aguirre GD, Acland GM, Ostrander EA.

Genomics. 2003 Jul;82(1):86-95.


Haplotype analysis of the MDR1 flanking region in the dog breed Elo.

Fecht S, Wöhlke A, Distl O.

Berl Munch Tierarztl Wochenschr. 2008 May-Jun;121(5-6):211-5.


Derived variants at six genes explain nearly half of size reduction in dog breeds.

Rimbault M, Beale HC, Schoenebeck JJ, Hoopes BC, Allen JJ, Kilroy-Glynn P, Wayne RK, Sutter NB, Ostrander EA.

Genome Res. 2013 Dec;23(12):1985-95. doi: 10.1101/gr.157339.113. Epub 2013 Sep 11.


Canine polydactyl mutations with heterogeneous origin in the conserved intronic sequence of LMBR1.

Park K, Kang J, Subedi KP, Ha JH, Park C.

Genetics. 2008 Aug;179(4):2163-72. doi: 10.1534/genetics.108.087114. Epub 2008 Aug 9.


Canine RD3 mutation establishes rod-cone dysplasia type 2 (rcd2) as ortholog of human and murine rd3.

Kukekova AV, Goldstein O, Johnson JL, Richardson MA, Pearce-Kelling SE, Swaroop A, Friedman JS, Aguirre GD, Acland GM.

Mamm Genome. 2009 Feb;20(2):109-23. doi: 10.1007/s00335-008-9163-4. Epub 2009 Jan 9.


A candidate gene analysis of canine hypoadrenocorticism in 3 dog breeds.

Short AD, Boag A, Catchpole B, Kennedy LJ, Massey J, Rothwell S, Husebye E, Ollier B.

J Hered. 2013 Nov-Dec;104(6):807-20. doi: 10.1093/jhered/est051. Epub 2013 Aug 31.


Collie eye anomaly in Hokkaido dogs: case study.

Mizukami K, Chang HS, Ota M, Yabuki A, Hossain MA, Rahman MM, Uddin MM, Yamato O.

Vet Ophthalmol. 2012 Mar;15(2):128-32. doi: 10.1111/j.1463-5224.2011.00950.x. Epub 2011 Sep 29.


Targeted analysis of four breeds narrows equine Multiple Congenital Ocular Anomalies locus to 208 kilobases.

Andersson LS, Lyberg K, Cothran G, Ramsey DT, Juras R, Mikko S, Ekesten B, Ewart S, Lindgren G.

Mamm Genome. 2011 Jun;22(5-6):353-60. doi: 10.1007/s00335-011-9325-7. Epub 2011 Apr 5.


Breed distribution and history of canine mdr1-1Delta, a pharmacogenetic mutation that marks the emergence of breeds from the collie lineage.

Neff MW, Robertson KR, Wong AK, Safra N, Broman KW, Slatkin M, Mealey KL, Pedersen NC.

Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11725-30. Epub 2004 Aug 2.


Assessment of the functionality of genome-wide canine SNP arrays and implications for canine disease association studies.

Ke X, Kennedy LJ, Short AD, Seppälä EH, Barnes A, Clements DN, Wood SH, Carter SD, Happ GM, Lohi H, Ollier WE.

Anim Genet. 2011 Apr;42(2):181-90. doi: 10.1111/j.1365-2052.2010.02132.x. Epub 2010 Nov 11.


Genetic and haplotypic structure in 14 European and African cattle breeds.

Gautier M, Faraut T, Moazami-Goudarzi K, Navratil V, Foglio M, Grohs C, Boland A, Garnier JG, Boichard D, Lathrop GM, Gut IG, Eggen A.

Genetics. 2007 Oct;177(2):1059-70. Epub 2007 Aug 24.


Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia.

Yeh CY, Goldstein O, Kukekova AV, Holley D, Knollinger AM, Huson HJ, Pearce-Kelling SE, Acland GM, Komáromy AM.

BMC Genet. 2013 Apr 20;14:27. doi: 10.1186/1471-2156-14-27.


Cross-breed comparisons identified a critical 591-kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate.

Setoguchi K, Furuta M, Hirano T, Nagao T, Watanabe T, Sugimoto Y, Takasuga A.

BMC Genet. 2009 Aug 4;10:43. doi: 10.1186/1471-2156-10-43.


Efficient mapping of mendelian traits in dogs through genome-wide association.

Karlsson EK, Baranowska I, Wade CM, Salmon Hillbertz NH, Zody MC, Anderson N, Biagi TM, Patterson N, Pielberg GR, Kulbokas EJ 3rd, Comstock KE, Keller ET, Mesirov JP, von Euler H, Kämpe O, Hedhammar A, Lander ES, Andersson G, Andersson L, Lindblad-Toh K.

Nat Genet. 2007 Nov;39(11):1321-8. Epub 2007 Sep 30.


The effects of dog breed development on genetic diversity and the relative influences of performance and conformation breeding.

Pedersen N, Liu H, Theilen G, Sacks B.

J Anim Breed Genet. 2013 Jun;130(3):236-48. doi: 10.1111/jbg.12017. Epub 2012 Dec 6.


Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds.

Alhaddad H, Khan R, Grahn RA, Gandolfi B, Mullikin JC, Cole SA, Gruffydd-Jones TJ, Häggström J, Lohi H, Longeri M, Lyons LA.

PLoS One. 2013;8(1):e53537. doi: 10.1371/journal.pone.0053537. Epub 2013 Jan 7.

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