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Items: 1 to 20 of 190

1.

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.

Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC.

BMC Genomics. 2007 Sep 19;8:330.

2.
3.

Dynamic rearrangements determine genome organization and useful traits in soybean.

Kim KD, Shin JH, Van K, Kim DH, Lee SH.

Plant Physiol. 2009 Nov;151(3):1066-76. doi: 10.1104/pp.109.141739. Epub 2009 Aug 14.

4.

Sequence conservation of homeologous bacterial artificial chromosomes and transcription of homeologous genes in soybean (Glycine max L. Merr.).

Schlueter JA, Scheffler BE, Schlueter SD, Shoemaker RC.

Genetics. 2006 Oct;174(2):1017-28. Epub 2006 Aug 3.

5.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
6.

Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps.

Walling JG, Shoemaker R, Young N, Mudge J, Jackson S.

Genetics. 2006 Mar;172(3):1893-900. Epub 2005 Dec 15.

7.

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat.

Sehgal SK, Li W, Rabinowicz PD, Chan A, Simková H, Doležel J, Gill BS.

BMC Plant Biol. 2012 May 4;12:64. doi: 10.1186/1471-2229-12-64.

8.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS.

Genome Biol. 2009;10(10):R111. doi: 10.1186/gb-2009-10-10-r111. Epub 2009 Oct 12.

9.

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy.

González VM, Benjak A, Hénaff EM, Mir G, Casacuberta JM, Garcia-Mas J, Puigdomènech P.

BMC Plant Biol. 2010 Nov 12;10:246. doi: 10.1186/1471-2229-10-246.

10.

Sequence level analysis of recently duplicated regions in soybean [Glycine max (L.) Merr.] genome.

Van K, Kim DH, Cai CM, Kim MY, Shin JH, Graham MA, Shoemaker RC, Choi BS, Yang TJ, Lee SH.

DNA Res. 2008 Apr 30;15(2):93-102. doi: 10.1093/dnares/dsn001. Epub 2008 Mar 11.

11.

The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.

Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi BS, Kim MY, Lee SH.

BMC Plant Biol. 2008 Dec 23;8:133. doi: 10.1186/1471-2229-8-133.

12.

Genetic marker anchoring by six-dimensional pools for development of a soybean physical map.

Wu X, Zhong G, Findley SD, Cregan P, Stacey G, Nguyen HT.

BMC Genomics. 2008 Jan 22;9:28. doi: 10.1186/1471-2164-9-28.

13.
14.

Genomic tools development for Aquilegia: construction of a BAC-based physical map.

Fang GC, Blackmon BP, Henry DC, Staton ME, Saski CA, Hodges SA, Tomkins JP, Luo H.

BMC Genomics. 2010 Nov 8;11:621. doi: 10.1186/1471-2164-11-621.

15.

A preliminary analysis of genome structure and composition in Gossypium hirsutum.

Guo W, Cai C, Wang C, Zhao L, Wang L, Zhang T.

BMC Genomics. 2008 Jul 1;9:314. doi: 10.1186/1471-2164-9-314.

16.

Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile.

Lin JY, Jacobus BH, SanMiguel P, Walling JG, Yuan Y, Shoemaker RC, Young ND, Jackson SA.

Genetics. 2005 Jul;170(3):1221-30. Epub 2005 May 6.

17.

Comparative genomic analysis of sequences sampled from a small region on soybean (Glycine max) molecular linkage group G.

Foster-Hartnett D, Mudge J, Larsen D, Danesh D, Yan H, Denny R, Peñuela S, Young ND.

Genome. 2002 Aug;45(4):634-45.

PMID:
12175066
18.

The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean.

Shultz JL, Kazi S, Bashir R, Afzal JA, Lightfoot DA.

Theor Appl Genet. 2007 Apr;114(6):1081-90. Epub 2007 Feb 8.

PMID:
17287974
19.

An overview of the Phalaenopsis orchid genome through BAC end sequence analysis.

Hsu CC, Chung YL, Chen TC, Lee YL, Kuo YT, Tsai WC, Hsiao YY, Chen YW, Wu WL, Chen HH.

BMC Plant Biol. 2011 Jan 6;11:3. doi: 10.1186/1471-2229-11-3.

20.

A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean.

Kim KD, El Baidouri M, Abernathy B, Iwata-Otsubo A, Chavarro C, Gonzales M, Libault M, Grimwood J, Jackson SA.

Plant Physiol. 2015 Aug;168(4):1433-47. doi: 10.1104/pp.15.00408. Epub 2015 Jul 6.

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