Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 94

1.

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat.

Martín-Cuadrado AB, López-García P, Alba JC, Moreira D, Monticelli L, Strittmatter A, Gottschalk G, Rodríguez-Valera F.

PLoS One. 2007 Sep 19;2(9):e914.

2.

CO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.

Martin-Cuadrado AB, Ghai R, Gonzaga A, Rodriguez-Valera F.

Appl Environ Microbiol. 2009 Dec;75(23):7436-44. doi: 10.1128/AEM.01283-09. Epub 2009 Oct 2.

3.

Microbial community genomics in eastern Mediterranean Sea surface waters.

Feingersch R, Suzuki MT, Shmoish M, Sharon I, Sabehi G, Partensky F, Béjà O.

ISME J. 2010 Jan;4(1):78-87. doi: 10.1038/ismej.2009.92. Epub 2009 Aug 20.

PMID:
19693100
4.

Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara.

Quaiser A, Zivanovic Y, Moreira D, López-García P.

ISME J. 2011 Feb;5(2):285-304. doi: 10.1038/ismej.2010.113. Epub 2010 Jul 29.

5.

Genomes of Abundant and Widespread Viruses from the Deep Ocean.

Mizuno CM, Ghai R, Saghaï A, López-García P, Rodriguez-Valera F.

MBio. 2016 Jul 26;7(4). pii: e00805-16. doi: 10.1128/mBio.00805-16.

6.

Phylogenetic diversity of sediment bacteria from the deep Northeastern Pacific Ocean: a comparison with the deep Eastern Mediterranean Sea.

Kouridaki I, Polymenakou PN, Tselepides A, Mandalakis M, Smith KL Jr.

Int Microbiol. 2010 Sep;13(3):143-50.

7.

Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton.

Quaiser A, López-García P, Zivanovic Y, Henn MR, Rodriguez-Valera F, Moreira D.

Environ Microbiol. 2008 Oct;10(10):2704-17. doi: 10.1111/j.1462-2920.2008.01691.x. Epub 2008 Jul 8.

PMID:
18627413
8.

Integrated metagenomic and metatranscriptomic analyses of microbial communities in the meso- and bathypelagic realm of north pacific ocean.

Wu J, Gao W, Johnson RH, Zhang W, Meldrum DR.

Mar Drugs. 2013 Oct 11;11(10):3777-801. doi: 10.3390/md11103777.

9.

Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.

Smedile F, Messina E, La Cono V, Tsoy O, Monticelli LS, Borghini M, Giuliano L, Golyshin PN, Mushegian A, Yakimov MM.

Environ Microbiol. 2013 Jan;15(1):167-82. doi: 10.1111/j.1462-2920.2012.02827.x. Epub 2012 Jul 25.

PMID:
22827264
10.

New insights into marine group III Euryarchaeota, from dark to light.

Haro-Moreno JM, Rodriguez-Valera F, López-García P, Moreira D, Martin-Cuadrado AB.

ISME J. 2017 May;11(5):1102-1117. doi: 10.1038/ismej.2016.188. Epub 2017 Jan 13.

PMID:
28085158
11.

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre.

Konstantinidis KT, Braff J, Karl DM, DeLong EF.

Appl Environ Microbiol. 2009 Aug;75(16):5345-55. doi: 10.1128/AEM.00473-09. Epub 2009 Jun 19.

12.

Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing.

Ghai R, Martin-Cuadrado AB, Molto AG, Heredia IG, Cabrera R, Martin J, Verdú M, Deschamps P, Moreira D, López-García P, Mira A, Rodriguez-Valera F.

ISME J. 2010 Sep;4(9):1154-66. doi: 10.1038/ismej.2010.44. Epub 2010 Apr 15.

PMID:
20393571
13.

Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea.

Brochier-Armanet C, Deschamps P, López-García P, Zivanovic Y, Rodríguez-Valera F, Moreira D.

ISME J. 2011 Aug;5(8):1291-302. doi: 10.1038/ismej.2011.16. Epub 2011 Feb 24.

14.

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.

Lesniewski RA, Jain S, Anantharaman K, Schloss PD, Dick GJ.

ISME J. 2012 Dec;6(12):2257-68. doi: 10.1038/ismej.2012.63. Epub 2012 Jun 14.

15.

Genomic signatures of fifth autotrophic carbon assimilation pathway in bathypelagic Crenarchaeota.

La Cono V, Smedile F, Ferrer M, Golyshin PN, Giuliano L, Yakimov MM.

Microb Biotechnol. 2010 Sep;3(5):595-606. doi: 10.1111/j.1751-7915.2010.00186.x. Epub 2010 Jul 9.

16.

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. doi: 10.1038/ismej.2008.40. Epub 2008 May 8.

PMID:
18463691
17.

Randomly amplified polymorphic DNA reveals tight links between viruses and microbes in the bathypelagic zone of the Northwestern Mediterranean Sea.

Winter C, Weinbauer MG.

Appl Environ Microbiol. 2010 Oct;76(20):6724-32. doi: 10.1128/AEM.00531-10. Epub 2010 Aug 20.

18.

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.

Stevens H, Ulloa O.

Environ Microbiol. 2008 May;10(5):1244-59. doi: 10.1111/j.1462-2920.2007.01539.x. Epub 2008 Feb 18.

PMID:
18294206
19.

Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids.

Mizuno CM, Rodriguez-Valera F, Garcia-Heredia I, Martin-Cuadrado AB, Ghai R.

Appl Environ Microbiol. 2013 Jan;79(2):688-95. doi: 10.1128/AEM.02742-12. Epub 2012 Nov 16.

20.

Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea.

De Corte D, Yokokawa T, Varela MM, Agogué H, Herndl GJ.

ISME J. 2009 Feb;3(2):147-58. doi: 10.1038/ismej.2008.94. Epub 2008 Sep 25.

PMID:
18818711

Supplemental Content

Support Center