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Items: 1 to 20 of 84


Divide and conquer: enriching environmental sequencing data.

Bergeron A, Belcaid M, Steward GF, Poisson G.

PLoS One. 2007 Sep 5;2(9):e830.


Accessing the soil metagenome for studies of microbial diversity.

Delmont TO, Robe P, Cecillon S, Clark IM, Constancias F, Simonet P, Hirsch PR, Vogel TM.

Appl Environ Microbiol. 2011 Feb;77(4):1315-24. doi: 10.1128/AEM.01526-10. Epub 2010 Dec 23.


The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.

Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E.

FEMS Microbiol Lett. 2009 Jul;296(1):97-101. doi: 10.1111/j.1574-6968.2009.01618.x. Epub 2009 May 1.


Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity.

Illeghems K, De Vuyst L, Papalexandratou Z, Weckx S.

PLoS One. 2012;7(5):e38040. doi: 10.1371/journal.pone.0038040. Epub 2012 May 29.


Alteration of microbial communities colonizing leaf litter in a temperate woodland stream by growth of trees under conditions of elevated atmospheric CO2.

Kelly JJ, Bansal A, Winkelman J, Janus LR, Hell S, Wencel M, Belt P, Kuehn KA, Rier ST, Tuchman NC.

Appl Environ Microbiol. 2010 Aug;76(15):4950-9. doi: 10.1128/AEM.00221-10. Epub 2010 Jun 11.


Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei.

Bowers RM, Lauber CL, Wiedinmyer C, Hamady M, Hallar AG, Fall R, Knight R, Fierer N.

Appl Environ Microbiol. 2009 Aug;75(15):5121-30. doi: 10.1128/AEM.00447-09. Epub 2009 Jun 5.


Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.

Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP.

BMC Biol. 2009 Nov 3;7:72. doi: 10.1186/1741-7007-7-72.


Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences.

Nagy LG, Petkovits T, Kovács GM, Voigt K, Vágvölgyi C, Papp T.

New Phytol. 2011 Aug;191(3):789-94. doi: 10.1111/j.1469-8137.2011.03707.x. Epub 2011 Mar 31.


Low sequencing efforts bias analyses of shared taxa in microbial communities.

Lemos LN, Fulthorpe RR, Roesch LF.

Folia Microbiol (Praha). 2012 Sep;57(5):409-13. doi: 10.1007/s12223-012-0155-0. Epub 2012 May 5.


Characterization of the microbial acid mine drainage microbial community using culturing and direct sequencing techniques.

Auld RR, Myre M, Mykytczuk NC, Leduc LG, Merritt TJ.

J Microbiol Methods. 2013 May;93(2):108-15. doi: 10.1016/j.mimet.2013.01.023. Epub 2013 Feb 26.


Microbial diversity in alpine tundra soils correlates with snow cover dynamics.

Zinger L, Shahnavaz B, Baptist F, Geremia RA, Choler P.

ISME J. 2009 Jul;3(7):850-9. doi: 10.1038/ismej.2009.20. Epub 2009 Mar 26.


Random sampling process leads to overestimation of β-diversity of microbial communities.

Zhou J, Jiang YH, Deng Y, Shi Z, Zhou BY, Xue K, Wu L, He Z, Yang Y.

MBio. 2013 Jun 11;4(3):e00324-13. doi: 10.1128/mBio.00324-13.


Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014. Epub 2011 Mar 30.


Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils.

Brown SP, Jumpponen A.

Mol Ecol. 2014 Feb;23(2):481-97. doi: 10.1111/mec.12487. Epub 2013 Sep 24.


It's all relative: ranking the diversity of aquatic bacterial communities.

Shaw AK, Halpern AL, Beeson K, Tran B, Venter JC, Martiny JB.

Environ Microbiol. 2008 Sep;10(9):2200-10. doi: 10.1111/j.1462-2920.2008.01626.x. Epub 2008 Jul 14.


Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology.

Unterseher M, Jumpponen A, Opik M, Tedersoo L, Moora M, Dormann CF, Schnittler M.

Mol Ecol. 2011 Jan;20(2):275-85. doi: 10.1111/j.1365-294X.2010.04948.x. Epub 2010 Dec 13.


Stability of microbial communities in goat milk during a lactation year: molecular approaches.

Callon C, Duthoit F, Delbès C, Ferrand M, Le Frileux Y, De Crémoux R, Montel MC.

Syst Appl Microbiol. 2007 Nov;30(7):547-60. Epub 2007 Jul 2.


Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities.

Blackwood CB, Hudleston D, Zak DR, Buyer JS.

Appl Environ Microbiol. 2007 Aug;73(16):5276-83. Epub 2007 Jun 29.


Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11. Print 2011.

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