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Items: 1 to 20 of 112

1.

Current progress in network research: toward reference networks for key model organisms.

Srinivasan BS, Shah NH, Flannick JA, Abeliuk E, Novak AF, Batzoglou S.

Brief Bioinform. 2007 Sep;8(5):318-32. Epub 2007 Aug 29. Review.

2.

Bioinformatics, multiscale modeling and the IUPS Physiome Project.

Hunter PJ, Crampin EJ, Nielsen PM.

Brief Bioinform. 2008 Jul;9(4):333-43. doi: 10.1093/bib/bbn024. Epub 2008 May 13.

3.

Graphs in molecular biology.

Huber W, Carey VJ, Long L, Falcon S, Gentleman R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S8. Review.

4.

Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes.

Brilli M, Fani R, LiĆ² P.

Brief Bioinform. 2008 Jan;9(1):34-45. Epub 2007 Nov 17. Review.

5.

GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.

Vlasblom J, Wu S, Pu S, Superina M, Liu G, Orsi C, Wodak SJ.

Bioinformatics. 2006 Sep 1;22(17):2178-9.

6.

The social network of a cell: recent advances in interactome mapping.

Charbonnier S, Gallego O, Gavin AC.

Biotechnol Annu Rev. 2008;14:1-28. doi: 10.1016/S1387-2656(08)00001-X. Review.

PMID:
18606358
7.

Inferring cellular networks--a review.

Markowetz F, Spang R.

BMC Bioinformatics. 2007 Sep 27;8 Suppl 6:S5. Review.

8.

Integration of genomic data for inferring protein complexes from global protein-protein interaction networks.

Zheng H, Wang H, Glass DH.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):5-16. doi: 10.1109/TSMCB.2007.908912.

PMID:
18270078
9.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079. Epub 2008 Mar 14.

10.

Key challenges in proteomics and proteoinformatics. Progress in proteins.

Hamady M, Cheung TH, Resing K, Cios KJ, Knight R.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):34-40. Review. No abstract available.

PMID:
15971839
11.

Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system.

Ratushny V, Golemis E.

Biotechniques. 2008 Apr;44(5):655-62. doi: 10.2144/000112797. Review.

12.
13.

Network integration and graph analysis in mammalian molecular systems biology.

Ma'ayan A.

IET Syst Biol. 2008 Sep;2(5):206-21. doi: 10.1049/iet-syb:20070075. Review.

14.

Construction of a reference gene association network from multiple profiling data: application to data analysis.

Ucar D, Neuhaus I, Ross-MacDonald P, Tilford C, Parthasarathy S, Siemers N, Ji RR.

Bioinformatics. 2007 Oct 15;23(20):2716-24. Epub 2007 Sep 10.

15.

BisoGenet: a new tool for gene network building, visualization and analysis.

Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R.

BMC Bioinformatics. 2010 Feb 17;11:91. doi: 10.1186/1471-2105-11-91.

16.
17.

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86. doi: 10.1186/1471-2105-9-86.

18.

Current trends in computational inference from mass spectrometry-based proteomics.

Webb-Robertson BJ, Cannon WR.

Brief Bioinform. 2007 Sep;8(5):304-17. Epub 2007 Jun 20. Review.

19.

Comparison of reverse-engineering methods using an in silico network.

Camacho D, Vera Licona P, Mendes P, Laubenbacher R.

Ann N Y Acad Sci. 2007 Dec;1115:73-89. Epub 2007 Oct 9. Review.

PMID:
17925358
20.

Current innovations and future challenges of network motif detection.

Tran NT, Mohan S, Xu Z, Huang CH.

Brief Bioinform. 2015 May;16(3):497-525. doi: 10.1093/bib/bbu021. Epub 2014 Jun 24.

PMID:
24966356
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