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Items: 1 to 20 of 222

1.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
2.

The alternative oxidase family of Vitis vinifera reveals an attractive model to study the importance of genomic design.

Costa JH, de Melo DF, Gouveia Z, Cardoso HG, Peixe A, Arnholdt-Schmitt B.

Physiol Plant. 2009 Dec;137(4):553-65. doi: 10.1111/j.1399-3054.2009.01267.x. Epub 2009 Jul 6.

PMID:
19682279
3.

The evolution of plant genomes: scaling up from a population perspective.

Flowers JM, Purugganan MD.

Curr Opin Genet Dev. 2008 Dec;18(6):565-70. doi: 10.1016/j.gde.2008.11.005. Epub 2009 Jan 7. Review.

PMID:
19131240
4.

A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H.

Science. 2002 Apr 5;296(5565):79-92.

5.

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.

6.

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.

Bowers JE, Chapman BA, Rong J, Paterson AH.

Nature. 2003 Mar 27;422(6930):433-8.

PMID:
12660784
7.

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.

Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K.

Mol Genet Genomics. 2002 Dec;268(4):434-45. Epub 2002 Nov 1.

PMID:
12471441
8.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

9.

Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.

Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J.

J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8.

PMID:
18407058
10.

Evidence for an ancient whole-genome duplication event in rice and other cereals.

Tian CG, Xiong YQ, Liu TY, Sun SH, Chen LB, Chen MS.

Yi Chuan Xue Bao. 2005 May;32(5):519-27.

PMID:
16018264
11.

Molecular evolution of the rice miR395 gene family.

Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L.

Cell Res. 2005 Aug;15(8):631-8.

12.

Use of genomic history to improve phylogeny and understanding of births and deaths in a gene family.

Sampedro J, Lee Y, Carey RE, dePamphilis C, Cosgrove DJ.

Plant J. 2005 Nov;44(3):409-19.

13.

Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus.

Dhadi SR, Krom N, Ramakrishna W.

Gene. 2009 Jan 15;429(1-2):65-73. doi: 10.1016/j.gene.2008.09.034. Epub 2008 Oct 11.

PMID:
18973799
14.

Characterization and evolution of microRNA genes derived from repetitive elements and duplication events in plants.

Sun J, Zhou M, Mao Z, Li C.

PLoS One. 2012;7(4):e34092. doi: 10.1371/journal.pone.0034092. Epub 2012 Apr 16.

15.

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.

Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C.

BMC Genomics. 2008 Jan 27;9:44. doi: 10.1186/1471-2164-9-44.

16.

Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome.

Zheng C, Kerr Wall P, Leebens-Mack J, DE Pamphilis C, Albert VA, Sankoff D.

J Bioinform Comput Biol. 2009 Jun;7(3):499-520.

PMID:
19507287
17.

Genome-wide analysis of MIKCC-type MADS box genes in grapevine.

Díaz-Riquelme J, Lijavetzky D, Martínez-Zapater JM, Carmona MJ.

Plant Physiol. 2009 Jan;149(1):354-69. doi: 10.1104/pp.108.131052. Epub 2008 Nov 7.

18.

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D.

Science. 2006 Sep 15;313(5793):1596-604.

19.

Selection and mutation on microRNA target sequences during rice evolution.

Guo X, Gui Y, Wang Y, Zhu QH, Helliwell C, Fan L.

BMC Genomics. 2008 Oct 2;9:454. doi: 10.1186/1471-2164-9-454.

20.

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.

PMID:
20361338

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