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Items: 1 to 20 of 132

1.

A comparison of background correction methods for two-colour microarrays.

Ritchie ME, Silver J, Oshlack A, Holmes M, Diyagama D, Holloway A, Smyth GK.

Bioinformatics. 2007 Oct 15;23(20):2700-7. Epub 2007 Aug 25.

PMID:
17720982
2.

Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment.

Tang T, François N, Glatigny A, Agier N, Mucchielli MH, Aggerbeck L, Delacroix H.

Bioinformatics. 2007 Oct 15;23(20):2686-91. Epub 2007 Aug 12.

PMID:
17698492
3.

Microarray blob-defect removal improves array analysis.

Song JS, Maghsoudi K, Li W, Fox E, Quackenbush J, Shirley Liu X.

Bioinformatics. 2007 Apr 15;23(8):966-71. Epub 2007 Mar 1.

PMID:
17332024
4.

Improving gene quantification by adjustable spot-image restoration.

Daskalakis A, Cavouras D, Bougioukos P, Kostopoulos S, Glotsos D, Kalatzis I, Kagadis GC, Argyropoulos C, Nikiforidis G.

Bioinformatics. 2007 Sep 1;23(17):2265-72. Epub 2007 Jun 28.

PMID:
17599935
5.

Segmentation and intensity estimation of microarray images using a gamma-t mixture model.

Baek J, Son YS, McLachlan GJ.

Bioinformatics. 2007 Feb 15;23(4):458-65. Epub 2006 Dec 12.

PMID:
17166856
6.

Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes.

Skibbe DS, Wang X, Zhao X, Borsuk LA, Nettleton D, Schnable PS.

Bioinformatics. 2006 Aug 1;22(15):1863-70. Epub 2006 May 26.

PMID:
16731695
7.

Simulation study of ratio calculation formulae of two-colour cDNA microarray data.

Jia H, Lu L, Hng SC, Li J.

Appl Bioinformatics. 2006;5(4):255-66.

PMID:
17140272
8.

Evaluating the performance of microarray segmentation algorithms.

Lehmussola A, Ruusuvuori P, Yli-Harja O.

Bioinformatics. 2006 Dec 1;22(23):2910-7. Epub 2006 Oct 10.

PMID:
17032673
9.

Evaluation of the gene-specific dye bias in cDNA microarray experiments.

Martin-Magniette ML, Aubert J, Cabannes E, Daudin JJ.

Bioinformatics. 2005 May 1;21(9):1995-2000. Epub 2005 Feb 2.

PMID:
15691855
10.

Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts.

Toedling J, Skylar O, Krueger T, Fischer JJ, Sperling S, Huber W.

BMC Bioinformatics. 2007 Jun 26;8:221. Erratum in: BMC Bioinformatics. 2007;8:443. Sklyar, Oleg [corrected to Skylar, Oleg]; Krueger, Tammo [added]; Fischer, JJ [added]; Sperling, Silke [added].

11.

Improved processing of microarray data using image reconstruction techniques.

O'Neill P, Magoulas GD, Liu X.

IEEE Trans Nanobioscience. 2003 Dec;2(4):176-83.

PMID:
15376906
12.

Use of within-array replicate spots for assessing differential expression in microarray experiments.

Smyth GK, Michaud J, Scott HS.

Bioinformatics. 2005 May 1;21(9):2067-75. Epub 2005 Jan 18.

PMID:
15657102
13.

ELB-Q: a new method for improving the robustness in DNA microarray image quantification.

Ma MQ, Zhang K, Wang HY, Shih FY.

IEEE Trans Inf Technol Biomed. 2007 Sep;11(5):574-82.

PMID:
17912974
14.

Unequal group variances in microarray data analyses.

Demissie M, Mascialino B, Calza S, Pawitan Y.

Bioinformatics. 2008 May 1;24(9):1168-74. doi: 10.1093/bioinformatics/btn100. Epub 2008 Mar 14.

PMID:
18344518
15.
16.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

17.

LabArray: real-time imaging and analytical tool for microarrays.

Ng JK, Liu WT.

Bioinformatics. 2005 Mar 1;21(5):689-90. Epub 2004 Oct 27.

PMID:
15509598
18.

A deformable grid-matching approach for microarray images.

Ceccarelli M, Antoniol G.

IEEE Trans Image Process. 2006 Oct;15(10):3178-88.

PMID:
17022279
19.

Copasetic analysis: a framework for the blind analysis of microarray imagery.

Fraser K, O'Neill P, Wang Z, Liu X.

Syst Biol (Stevenage). 2004 Jun;1(1):190-6.

PMID:
17052129
20.

MAnGO: an interactive R-based tool for two-colour microarray analysis.

Marisa L, Ichanté JL, Reymond N, Aggerbeck L, Delacroix H, Mucchielli-Giorgi MH.

Bioinformatics. 2007 Sep 1;23(17):2339-41. Epub 2007 Jun 22.

PMID:
17586547

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