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Items: 1 to 20 of 135

1.

Extensive parallelism in protein evolution.

Bazykin GA, Kondrashov FA, Brudno M, Poliakov A, Dubchak I, Kondrashov AS.

Biol Direct. 2007 Aug 16;2:20.

2.

Neutrality tests of conservative-radical amino acid changes in nuclear- and mitochondrially-encoded proteins.

Rand DM, Weinreich DM, Cezairliyan BO.

Gene. 2000 Dec 30;261(1):115-25.

PMID:
11164043
3.

Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection.

Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL.

J Mol Evol. 2003;57 Suppl 1:S154-64.

PMID:
15008412
4.
5.

Molecular evolution of Drosophila cuticular protein genes.

Cornman RS.

PLoS One. 2009 Dec 17;4(12):e8345. doi: 10.1371/journal.pone.0008345.

6.
7.
8.

Epistasis as the primary factor in molecular evolution.

Breen MS, Kemena C, Vlasov PK, Notredame C, Kondrashov FA.

Nature. 2012 Oct 25;490(7421):535-8. doi: 10.1038/nature11510. Epub 2012 Oct 14.

PMID:
23064225
9.

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series.

Rogozin IB, Thomson K, Csürös M, Carmel L, Koonin EV.

Biol Direct. 2008 Mar 17;3:7. doi: 10.1186/1745-6150-3-7.

10.

Distribution of the strength of selection against amino acid replacements in human proteins.

Yampolsky LY, Kondrashov FA, Kondrashov AS.

Hum Mol Genet. 2005 Nov 1;14(21):3191-201. Epub 2005 Sep 20.

PMID:
16174645
11.
12.

Natural selection drives the accumulation of amino acid tandem repeats in human proteins.

Mularoni L, Ledda A, Toll-Riera M, Albà MM.

Genome Res. 2010 Jun;20(6):745-54. doi: 10.1101/gr.101261.109. Epub 2010 Mar 24.

13.

Frequent and widespread parallel evolution of protein sequences.

Rokas A, Carroll SB.

Mol Biol Evol. 2008 Sep;25(9):1943-53. doi: 10.1093/molbev/msn143. Epub 2008 Jun 25.

PMID:
18583353
14.

Excessive homoplasy in an evolutionarily constrained protein.

Wells RS.

Proc Biol Sci. 1996 Apr 22;263(1369):393-400.

PMID:
8637923
15.

Sequence space and the ongoing expansion of the protein universe.

Povolotskaya IS, Kondrashov FA.

Nature. 2010 Jun 17;465(7300):922-6. doi: 10.1038/nature09105. Epub 2010 May 19.

PMID:
20485343
16.

Rate and breadth of protein evolution are only weakly correlated.

Naumenko SA, Kondrashov AS.

Biol Direct. 2012 Feb 15;7:8. doi: 10.1186/1745-6150-7-8.

17.

Lineage-specific differences in the amino acid substitution process.

Huzurbazar S, Kolesov G, Massey SE, Harris KC, Churbanov A, Liberles DA.

J Mol Biol. 2010 Mar 12;396(5):1410-21. doi: 10.1016/j.jmb.2009.11.075. Epub 2010 Jan 15.

18.

Fitness conferred by replaced amino acids declines with time.

Naumenko SA, Kondrashov AS, Bazykin GA.

Biol Lett. 2012 Oct 23;8(5):825-8. doi: 10.1098/rsbl.2012.0356. Epub 2012 May 23.

19.

Effect of co-evolving amino acid residues on topology of phylogenetic trees.

Sherbakov DY, Triboy TI.

Biochemistry (Mosc). 2007 Dec;72(12):1363-7.

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