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Items: 1 to 20 of 107

1.

Estimation of DNA sequence context-dependent mutation rates using primate genomic sequences.

Zhang W, Bouffard GG, Wallace SS, Bond JP; NISC Comparative Sequencing Program.

J Mol Evol. 2007 Sep;65(3):207-14. Epub 2007 Aug 4.

PMID:
17676366
2.

Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation.

Elango N, Kim SH, Vigoda E, Yi SV.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000015. doi: 10.1371/journal.pcbi.1000015.

3.

Pitfalls of the most commonly used models of context dependent substitution.

Lindsay H, Yap VB, Ying H, Huttley GA.

Biol Direct. 2008 Dec 16;3:52. doi: 10.1186/1745-6150-3-52. Erratum in: Biol Direct. 2009;(4). doi: 10.1186/1745-6150-4-10.

4.

The mutational spectrum of non-CpG DNA varies with CpG content.

Walser JC, Furano AV.

Genome Res. 2010 Jul;20(7):875-82. doi: 10.1101/gr.103283.109. Epub 2010 May 24.

6.

The apparent enhancement of CpG transversions in primate lineage is a consequence of multiple replacements.

Borštnik B, Pumpernik D.

J Bioinform Comput Biol. 2014 Jun;12(3):1450011. doi: 10.1142/S0219720014500115. Epub 2014 Apr 30.

PMID:
24969749
7.

Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals.

Gaffney DJ, Keightley PD.

BMC Evol Biol. 2008 Sep 30;8:265. doi: 10.1186/1471-2148-8-265.

8.

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

Taylor J, Tyekucheva S, Zody M, Chiaromonte F, Makova KD.

Mol Biol Evol. 2006 Mar;23(3):565-73. Epub 2005 Nov 9.

PMID:
16280537
9.
10.
12.

Relative mutation rates of each nucleotide for another estimated from allele frequency spectra at human gene loci.

Park L.

Genet Res (Camb). 2009 Aug;91(4):293-303. doi: 10.1017/S0016672309990164.

PMID:
19640324
13.

The complementary neighborhood patterns and methylation-to-mutation likelihood structures of 15,110 single-nucleotide polymorphisms in the bovine genome.

Jiang Z, Wu XL, Zhang M, Michal JJ, Wright RW Jr.

Genetics. 2008 Sep;180(1):639-47. doi: 10.1534/genetics.108.090860. Epub 2008 Aug 20.

14.

The rates of G:C-->T:A and G:C-->C:G transversions at CpG dinucleotides in the human factor IX gene.

Ketterling RP, Vielhaber E, Sommer SS.

Am J Hum Genet. 1994 May;54(5):831-5.

15.

Mutations causing hemophilia B: direct estimate of the underlying rates of spontaneous germ-line transitions, transversions, and deletions in a human gene.

Koeberl DD, Bottema CD, Ketterling RP, Bridge PJ, Lillicrap DP, Sommer SS.

Am J Hum Genet. 1990 Aug;47(2):202-17.

16.
17.

The influence of nearest neighbors on the rate and pattern of spontaneous point mutations.

Blake RD, Hess ST, Nicholson-Tuell J.

J Mol Evol. 1992 Mar;34(3):189-200.

PMID:
1588594
19.

Large-scale inference of the point mutational spectrum in human segmental duplications.

Nakken S, Rødland EA, Rognes T, Hovig E.

BMC Genomics. 2009 Jan 22;10:43. doi: 10.1186/1471-2164-10-43.

20.

CpG dinucleotides and the mutation rate of non-CpG DNA.

Walser JC, Ponger L, Furano AV.

Genome Res. 2008 Sep;18(9):1403-14. doi: 10.1101/gr.076455.108. Epub 2008 Jun 11.

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