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Items: 1 to 20 of 96

1.

Detection of blob objects in microscopic zebrafish images based on gradient vector diffusion.

Li G, Liu T, Nie J, Guo L, Malicki J, Mara A, Holley SA, Xia W, Wong ST.

Cytometry A. 2007 Oct;71(10):835-45.

2.

Segmentation of touching cell nuclei using gradient flow tracking.

Li G, Liu T, Nie J, Guo L, Chen J, Zhu J, Xia W, Mara A, Holley S, Wong ST.

J Microsc. 2008 Jul;231(Pt 1):47-58. doi: 10.1111/j.1365-2818.2008.02016.x.

3.

An automated method for cell detection in zebrafish.

Liu T, Li G, Nie J, Tarokh A, Zhou X, Guo L, Malicki J, Xia W, Wong ST.

Neuroinformatics. 2008 Spring;6(1):5-21. doi: 10.1007/s12021-007-9005-7. Epub 2008 Feb 21.

PMID:
18288618
4.

Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.

Zanella C, Campana M, Rizzi B, Melani C, Sanguinetti G, Bourgine P, Mikula K, Peyrieras N, Sarti A.

IEEE Trans Image Process. 2010 Mar;19(3):770-81. doi: 10.1109/TIP.2009.2033629. Epub 2009 Oct 6.

PMID:
19955038
5.

Automated gene oscillation phase classification for zebrafish presomitic mesoderm cells.

Lu Y, Lu J, Liu T, Yang J.

Cytometry A. 2011 Sep;79(9):727-35. doi: 10.1002/cyto.a.21097. Epub 2011 Jun 27.

6.

Automated tool for the detection of cell nuclei in digital microscopic images: application to retinal images.

Byun J, Verardo MR, Sumengen B, Lewis GP, Manjunath BS, Fisher SK.

Mol Vis. 2006 Aug 16;12:949-60.

7.

Computerized image analysis for quantitative neuronal phenotyping in zebrafish.

Liu T, Lu J, Wang Y, Campbell WA, Huang L, Zhu J, Xia W, Wong ST.

J Neurosci Methods. 2006 Jun 15;153(2):190-202. Epub 2005 Dec 20.

PMID:
16364449
8.

Cell nuclei and cytoplasm joint segmentation using the sliding band filter.

Quelhas P, Marcuzzo M, Mendonça AM, Campilho A.

IEEE Trans Med Imaging. 2010 Aug;29(8):1463-73. doi: 10.1109/TMI.2010.2048253. Epub 2010 Jun 3.

PMID:
20525532
9.

Automated three-dimensional detection and counting of neuron somata.

Oberlaender M, Dercksen VJ, Egger R, Gensel M, Sakmann B, Hege HC.

J Neurosci Methods. 2009 May 30;180(1):147-60. doi: 10.1016/j.jneumeth.2009.03.008. Epub 2009 Mar 21.

PMID:
19427542
10.

Embryo zebrafish segmentation using an improved hybrid method.

Wu T, Lu J, Lu Y, Liu T, Yang J.

J Microsc. 2013 Apr;250(1):68-75. doi: 10.1111/jmi.12019. Epub 2013 Feb 15.

11.

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.

Keller PJ, Schmidt AD, Wittbrodt J, Stelzer EH.

Science. 2008 Nov 14;322(5904):1065-9. doi: 10.1126/science.1162493. Epub 2008 Oct 9.

12.

Image registration and distortion correction in ion microscopy.

Olivo JC, Kahn E, Halpern S, Fragu P.

J Microsc. 1991 Dec;164(Pt 3):263-72.

PMID:
1795385
13.

Gradient based intensity normalization.

Sintorn IM, Bischof L, Jackway P, Haggarty S, Buckley M.

J Microsc. 2010 Dec;240(3):249-58. doi: 10.1111/j.1365-2818.2010.03415.x.

14.
15.

Nonrigid registration of 3-d multichannel microscopy images of cell nuclei.

Yang S, Kohler D, Teller K, Cremer T, Le Baccon P, Heard E, Eils R, Rohr K.

IEEE Trans Image Process. 2008 Apr;17(4):493-9. doi: 10.1109/TIP.2008.918017.

PMID:
18390358
16.

An automatic integrated approach for stained neuron detection in studying neuron migration.

Huang Y, Sun X, Hu G.

Microsc Res Tech. 2010 Feb;73(2):109-18. doi: 10.1002/jemt.20762.

PMID:
19697431
17.

Automatic segmentation on multiple starch granules from microscopic images.

Guo S.

Microsc Res Tech. 2012 Apr;75(4):524-30. doi: 10.1002/jemt.21087. Epub 2011 Oct 14.

PMID:
21997964
18.

A single method for cryofixation and correlative light, electron microscopy and tomography of zebrafish embryos.

Nixon SJ, Webb RI, Floetenmeyer M, Schieber N, Lo HP, Parton RG.

Traffic. 2009 Feb;10(2):131-6. doi: 10.1111/j.1600-0854.2008.00859.x. Epub 2008 Nov 20.

19.

Detection of deformable objects in 3D images using Markov-Chain Monte Carlo and spherical harmonics.

Khairy K, Reynaud E, Stelzer E.

Med Image Comput Comput Assist Interv. 2008;11(Pt 2):1075-82.

PMID:
18982711
20.

Segmentation of 3D cell membrane images by PDE methods and its applications.

Mikula K, Peyriéras N, Remešíková M, Stašová O.

Comput Biol Med. 2011 Jun;41(6):326-39. doi: 10.1016/j.compbiomed.2011.03.010. Epub 2011 Apr 15.

PMID:
21497333

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