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Items: 1 to 20 of 89

1.

A mammalian microRNA expression atlas based on small RNA library sequencing.

Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foà R, Schliwka J, Fuchs U, Novosel A, Müller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T.

Cell. 2007 Jun 29;129(7):1401-14.

2.

Characterization of the small RNA component of leaves and fruits from four different cucurbit species.

Jagadeeswaran G, Nimmakayala P, Zheng Y, Gowdu K, Reddy UK, Sunkar R.

BMC Genomics. 2012 Jul 23;13:329. doi: 10.1186/1471-2164-13-329.

3.

Next-generation sequencing identifies the natural killer cell microRNA transcriptome.

Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER.

Genome Res. 2010 Nov;20(11):1590-604. doi: 10.1101/gr.107995.110. Epub 2010 Oct 8.

4.

Characterization and comparative profiling of MiRNA transcriptomes in bighead carp and silver carp.

Chi W, Tong C, Gan X, He S.

PLoS One. 2011;6(8):e23549. doi: 10.1371/journal.pone.0023549. Epub 2011 Aug 15.

5.

Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation.

Sempere LF, Freemantle S, Pitha-Rowe I, Moss E, Dmitrovsky E, Ambros V.

Genome Biol. 2004;5(3):R13. Epub 2004 Feb 16.

6.

Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane.

Zanca AS, Vicentini R, Ortiz-Morea FA, Del Bem LE, da Silva MJ, Vincentz M, Nogueira FT.

BMC Plant Biol. 2010 Nov 24;10:260. doi: 10.1186/1471-2229-10-260.

7.

Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues.

Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP.

Physiol Genomics. 2007 Mar 14;29(1):35-43. Epub 2006 Nov 14.

8.

MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries.

Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M.

Stem Cells. 2008 Oct;26(10):2496-505. doi: 10.1634/stemcells.2008-0356. Epub 2008 Jun 26.

9.

Characterization of microRNAs in mud crab Scylla paramamosain under Vibrio parahaemolyticus infection.

Li S, Zhu S, Li C, Zhang Z, Zhou L, Wang S, Wang S, Zhang Y, Wen X.

PLoS One. 2013 Aug 30;8(8):e73392. doi: 10.1371/journal.pone.0073392. eCollection 2013.

10.

Computational and experimental identification of C. elegans microRNAs.

Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J.

Mol Cell. 2003 May;11(5):1253-63.

11.

New methods for next generation sequencing based microRNA expression profiling.

Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA.

BMC Genomics. 2010 Dec 20;11:716. doi: 10.1186/1471-2164-11-716.

12.

Increasing MicroRNA target prediction confidence by the relative R(2) method.

Wang H, Li WH.

J Theor Biol. 2009 Aug 21;259(4):793-8. doi: 10.1016/j.jtbi.2009.05.007. Epub 2009 May 20.

13.

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region.

Kircher M, Bock C, Paulsen M.

BMC Genomics. 2008 Jul 23;9:346. doi: 10.1186/1471-2164-9-346.

14.

Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development.

Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R.

BMC Genomics. 2010 Jan 20;11:52. doi: 10.1186/1471-2164-11-52.

15.

MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

Yuan Z, Sun X, Liu H, Xie J.

PLoS One. 2011 Mar 16;6(3):e17666. doi: 10.1371/journal.pone.0017666.

16.

Analyses of a Glycine max degradome library identify microRNA targets and microRNAs that trigger secondary siRNA biogenesis.

Hu Z, Jiang Q, Ni Z, Chen R, Xu S, Zhang H.

J Integr Plant Biol. 2013 Feb;55(2):160-76. doi: 10.1111/jipb.12002.

PMID:
23131131
17.

The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages.

Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J.

PLoS One. 2008 Aug 20;3(8):e2997. doi: 10.1371/journal.pone.0002997.

18.

Identification and expression profiling of Vigna mungo microRNAs from leaf small RNA transcriptome by deep sequencing.

Paul S, Kundu A, Pal A.

J Integr Plant Biol. 2014 Jan;56(1):15-23. doi: 10.1111/jipb.12115. Epub 2013 Dec 19.

PMID:
24138283
19.

Transcriptome-wide analysis of microRNA expression in the malaria mosquito Anopheles gambiae.

Biryukova I, Ye T, Levashina E.

BMC Genomics. 2014 Jul 4;15:557. doi: 10.1186/1471-2164-15-557.

20.

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.

Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Pühler A, Borth N, Grillari J.

J Biotechnol. 2011 Apr 20;153(1-2):62-75. doi: 10.1016/j.jbiotec.2011.02.011. Epub 2011 Mar 30.

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