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Items: 1 to 20 of 138

1.

KAAS: an automatic genome annotation and pathway reconstruction server.

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. Epub 2007 May 25.

2.

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.

Mao X, Cai T, Olyarchuk JG, Wei L.

Bioinformatics. 2005 Oct 1;21(19):3787-93. Epub 2005 Apr 7.

PMID:
15817693
3.

Gene annotation and pathway mapping in KEGG.

Aoki-Kinoshita KF, Kanehisa M.

Methods Mol Biol. 2007;396:71-91.

PMID:
18025687
4.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

PMID:
15347579
5.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

6.

KOBAS server: a web-based platform for automated annotation and pathway identification.

Wu J, Mao X, Cai T, Luo J, Wei L.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W720-4.

7.

Automatic annotation of organellar genomes with DOGMA.

Wyman SK, Jansen RK, Boore JL.

Bioinformatics. 2004 Nov 22;20(17):3252-5. Epub 2004 Jun 4.

PMID:
15180927
8.

KEGG Atlas mapping for global analysis of metabolic pathways.

Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6. doi: 10.1093/nar/gkn282. Epub 2008 May 13.

9.

KEGG: Kyoto Encyclopedia of Genes and Genomes.

Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):29-34.

10.

Deriving pathway maps from automated text analysis using a grammar-based approach.

Olsson B, Gawronska B, Erlendsson B.

J Bioinform Comput Biol. 2006 Apr;4(2):483-501.

PMID:
16819797
11.

Integrated analysis of the genome and the transcriptome by FANTOM.

Katayama S, Kanamori M, Hayashizaki Y.

Brief Bioinform. 2004 Sep;5(3):249-58. Review.

PMID:
15383211
12.

The KEGG resource for deciphering the genome.

Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80.

13.
14.

Dynamic exploration and editing of KEGG pathway diagrams.

Klukas C, Schreiber F.

Bioinformatics. 2007 Feb 1;23(3):344-50. Epub 2006 Dec 1.

PMID:
17142815
15.

MIPS bacterial genomes functional annotation benchmark dataset.

Tetko IV, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Fobo G, Ruepp A, Antonov AV, Surmeli D, Mewes HW.

Bioinformatics. 2005 May 15;21(10):2520-1. Epub 2005 Mar 15.

PMID:
15769832
16.

The KEGG database.

Kanehisa M.

Novartis Found Symp. 2002;247:91-101; discussion 101-3, 119-28, 244-52. Review.

PMID:
12539951
17.

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Zhang JD, Wiemann S.

Bioinformatics. 2009 Jun 1;25(11):1470-1. doi: 10.1093/bioinformatics/btp167. Epub 2009 Mar 23.

18.

The KEGG databases at GenomeNet.

Kanehisa M, Goto S, Kawashima S, Nakaya A.

Nucleic Acids Res. 2002 Jan 1;30(1):42-6.

19.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, M├ędigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65. Print 2006.

20.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

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