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Items: 1 to 20 of 141

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1.

SINEs, evolution and genome structure in the opossum.

Gu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DD.

Gene. 2007 Jul 1;396(1):46-58. Epub 2007 Mar 19.

PMID:
17442506
2.

Biased distributions and decay of long interspersed nuclear elements in the chicken genome.

Abrusán G, Krambeck HJ, Junier T, Giordano J, Warburton PE.

Genetics. 2008 Jan;178(1):573-81. Epub 2007 Oct 18.

3.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K.

Nature. 2007 May 10;447(7141):167-77.

PMID:
17495919
4.

Strong regional biases in nucleotide substitution in the chicken genome.

Webster MT, Axelsson E, Ellegren H.

Mol Biol Evol. 2006 Jun;23(6):1203-16. Epub 2006 Mar 21.

PMID:
16551647
5.

Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype.

Mugal CF, Arndt PF, Ellegren H.

Mol Biol Evol. 2013 Jul;30(7):1700-12. doi: 10.1093/molbev/mst067. Epub 2013 Apr 5.

6.

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes.

Romiguier J, Ranwez V, Douzery EJ, Galtier N.

Genome Res. 2010 Aug;20(8):1001-9. doi: 10.1101/gr.104372.109. Epub 2010 Jun 7.

7.

The (r)evolution of SINE versus LINE distributions in primate genomes: sex chromosomes are important.

Kvikstad EM, Makova KD.

Genome Res. 2010 May;20(5):600-13. doi: 10.1101/gr.099044.109. Epub 2010 Mar 10.

8.

Two new SINE elements, p-SINE2 and p-SINE3, from rice.

Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.

Genes Genet Syst. 2005 Jun;80(3):161-71.

9.

Biased gene conversion and the evolution of mammalian genomic landscapes.

Duret L, Galtier N.

Annu Rev Genomics Hum Genet. 2009;10:285-311. doi: 10.1146/annurev-genom-082908-150001. Review.

PMID:
19630562
10.

Newly discovered young CORE-SINEs in marsupial genomes.

Munemasa M, Nikaido M, Nishihara H, Donnellan S, Austin CC, Okada N.

Gene. 2008 Jan 15;407(1-2):176-85. Epub 2007 Oct 12.

PMID:
17988807
11.

Tracking marsupial evolution using archaic genomic retroposon insertions.

Nilsson MA, Churakov G, Sommer M, Tran NV, Zemann A, Brosius J, Schmitz J.

PLoS Biol. 2010 Jul 27;8(7):e1000436. doi: 10.1371/journal.pbio.1000436.

12.

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes.

Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC.

Genome Res. 2004 Apr;14(4):517-27.

13.

Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates.

Figuet E, Ballenghien M, Romiguier J, Galtier N.

Genome Biol Evol. 2014 Dec 19;7(1):240-50. doi: 10.1093/gbe/evu277.

14.

First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination rates.

Samollow PB, Kammerer CM, Mahaney SM, Schneider JL, Westenberger SJ, VandeBerg JL, Robinson ES.

Genetics. 2004 Jan;166(1):307-29.

15.

Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome.

Greally JM.

Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):327-32. Epub 2001 Dec 26.

16.

Exponential decay of GC content detected by strand-symmetric substitution rates influences the evolution of isochore structure.

Karro JE, Peifer M, Hardison RC, Kollmann M, von Grünberg HH.

Mol Biol Evol. 2008 Feb;25(2):362-74. Epub 2007 Nov 27.

PMID:
18042807
17.

SINEs as driving forces in genome evolution.

Schmitz J.

Genome Dyn. 2012;7:92-107. doi: 10.1159/000337117. Epub 2012 Jun 25. Review.

PMID:
22759815
18.

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.

Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J.

Genome Res. 2007 Jul;17(7):992-1004. Epub 2007 May 10.

19.
20.

Sauria SINEs: Novel short interspersed retroposable elements that are widespread in reptile genomes.

Piskurek O, Austin CC, Okada N.

J Mol Evol. 2006 May;62(5):630-44. Epub 2006 Apr 11.

PMID:
16612539

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