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Items: 1 to 20 of 103

1.

Evolutionary and biomedical insights from the rhesus macaque genome.

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS.

Science. 2007 Apr 13;316(5822):222-34.

2.

Human-specific changes of genome structure detected by genomic triangulation.

Harris RA, Rogers J, Milosavljevic A.

Science. 2007 Apr 13;316(5822):235-7.

3.

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.

Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X, Wang J.

Nat Biotechnol. 2011 Oct 16;29(11):1019-23. doi: 10.1038/nbt.1992.

PMID:
22002653
4.

Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta).

Fawcett GL, Raveendran M, Deiros DR, Chen D, Yu F, Harris RA, Ren Y, Muzny DM, Reid JG, Wheeler DA, Worley KC, Shelton SE, Kalin NH, Milosavljevic A, Gibbs R, Rogers J.

BMC Genomics. 2011 Jun 13;12:311. doi: 10.1186/1471-2164-12-311.

5.

Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque.

Fang X, Zhang Y, Zhang R, Yang L, Li M, Ye K, Guo X, Wang J, Su B.

Genome Biol. 2011 Jul 6;12(7):R63. doi: 10.1186/gb-2011-12-7-r63.

6.
7.

Epigenomic annotation of gene regulatory alterations during evolution of the primate brain.

Vermunt MW, Tan SC, Castelijns B, Geeven G, Reinink P, de Bruijn E, Kondova I, Persengiev S; Netherlands Brain Bank, Bontrop R, Cuppen E, de Laat W, Creyghton MP.

Nat Neurosci. 2016 Mar;19(3):494-503. doi: 10.1038/nn.4229. Epub 2016 Jan 25.

PMID:
26807951
8.

Widespread ultraconservation divergence in primates.

Ovcharenko I.

Mol Biol Evol. 2008 Aug;25(8):1668-76. doi: 10.1093/molbev/msn116. Epub 2008 May 19.

9.

[Molecular evolution of GAGE gene family].

Zhu QY, Liu Y, Zhu NS.

Yi Chuan. 2007 May;29(5):559-64. Chinese.

PMID:
17548324
10.

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies.

Lee AS, Gutiérrez-Arcelus M, Perry GH, Vallender EJ, Johnson WE, Miller GM, Korbel JO, Lee C.

Hum Mol Genet. 2008 Apr 15;17(8):1127-36. doi: 10.1093/hmg/ddn002. Epub 2008 Jan 7.

PMID:
18180252
11.

Expanding whole exome resequencing into non-human primates.

Vallender EJ.

Genome Biol. 2011 Sep 14;12(9):R87. doi: 10.1186/gb-2011-12-9-r87.

12.

Whole-genome sequencing of tibetan macaque (Macaca Thibetana) provides new insight into the macaque evolutionary history.

Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J.

Mol Biol Evol. 2014 Jun;31(6):1475-89. doi: 10.1093/molbev/msu104. Epub 2014 Mar 18.

13.

The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences.

Xue C, Raveendran M, Harris RA, Fawcett GL, Liu X, White S, Dahdouli M, Rio Deiros D, Below JE, Salerno W, Cox L, Fan G, Ferguson B, Horvath J, Johnson Z, Kanthaswamy S, Kubisch HM, Liu D, Platt M, Smith DG, Sun B, Vallender EJ, Wang F, Wiseman RW, Chen R, Muzny DM, Gibbs RA, Yu F, Rogers J.

Genome Res. 2016 Dec;26(12):1651-1662. Epub 2016 Oct 17.

14.

Evolution of the interferon alpha gene family in eutherian mammals.

Woelk CH, Frost SD, Richman DD, Higley PE, Kosakovsky Pond SL.

Gene. 2007 Aug 1;397(1-2):38-50. Epub 2007 Apr 3.

15.

Sequencing of rhesus macaque Y chromosome clarifies origins and evolution of the DAZ (Deleted in AZoospermia) genes.

Hughes JF, Skaletsky H, Page DC.

Bioessays. 2012 Dec;34(12):1035-44. doi: 10.1002/bies.201200066. Epub 2012 Oct 10.

16.

Assessing natural introgression in 2 biomedical model species, the rhesus macaque (Macaca mulatta) and the long-tailed macaque (Macaca fascicularis).

Bonhomme M, Cuartero S, Blancher A, Crouau-Roy B.

J Hered. 2009 Mar-Apr;100(2):158-69. doi: 10.1093/jhered/esn093. Epub 2008 Oct 30.

PMID:
18974398
17.

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques.

Street SL, Kyes RC, Grant R, Ferguson B.

BMC Genomics. 2007 Dec 31;8:480. doi: 10.1186/1471-2164-8-480.

18.

The rhesus macaque is three times as diverse but more closely equivalent in damaging coding variation as compared to the human.

Yuan Q, Zhou Z, Lindell SG, Higley JD, Ferguson B, Thompson RC, Lopez JF, Suomi SJ, Baghal B, Baker M, Mash DC, Barr CS, Goldman D.

BMC Genet. 2012 Jun 29;13:52. doi: 10.1186/1471-2156-13-52.

19.

Multicopy gene family evolution on primate Y chromosomes.

Ghenu AH, Bolker BM, Melnick DJ, Evans BJ.

BMC Genomics. 2016 Feb 29;17:157. doi: 10.1186/s12864-015-2187-8.

20.

An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci.

Rogers J, Garcia R, Shelledy W, Kaplan J, Arya A, Johnson Z, Bergstrom M, Novakowski L, Nair P, Vinson A, Newman D, Heckman G, Cameron J.

Genomics. 2006 Jan;87(1):30-8.

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