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Items: 1 to 20 of 73

1.

The extant core bacterial proteome is an archive of the origin of life.

Danchin A, Fang G, Noria S.

Proteomics. 2007 Mar;7(6):875-89.

PMID:
17370266
2.

Proteome evolution and the metabolic origins of translation and cellular life.

Caetano-Anollés D, Kim KM, Mittenthal JE, Caetano-Anollés G.

J Mol Evol. 2011 Jan;72(1):14-33. doi: 10.1007/s00239-010-9400-9. Epub 2010 Nov 17.

PMID:
21082171
3.

Intraphylum diversity and complex evolution of cyanobacterial aminoacyl-tRNA synthetases.

Luque I, Riera-Alberola ML, Andújar A, Ochoa de Alda JA.

Mol Biol Evol. 2008 Nov;25(11):2369-89. doi: 10.1093/molbev/msn197. Epub 2008 Sep 4.

PMID:
18775898
4.

Parallel evolution of truncated transfer RNA genes in arachnid mitochondrial genomes.

Masta SE, Boore JL.

Mol Biol Evol. 2008 May;25(5):949-59. doi: 10.1093/molbev/msn051. Epub 2008 Feb 23.

PMID:
18296699
5.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
6.

Acquisition of a bacterial RumA-type tRNA(uracil-54, C5)-methyltransferase by Archaea through an ancient horizontal gene transfer.

Urbonavicius J, Auxilien S, Walbott H, Trachana K, Golinelli-Pimpaneau B, Brochier-Armanet C, Grosjean H.

Mol Microbiol. 2008 Jan;67(2):323-35. Epub 2007 Dec 7.

7.

The origin of the RNA world: co-evolution of genes and metabolism.

Copley SD, Smith E, Morowitz HJ.

Bioorg Chem. 2007 Dec;35(6):430-43. Epub 2007 Sep 25.

PMID:
17897696
8.

Comprehensive phylogenetic analysis of evolutionarily conserved rRNA adenine dimethyltransferase suggests diverse bacterial contributions to the nucleus-encoded plastid proteome.

Park AK, Kim H, Jin HJ.

Mol Phylogenet Evol. 2009 Feb;50(2):282-9. doi: 10.1016/j.ympev.2008.10.020. Epub 2008 Nov 5.

PMID:
19017544
9.

Presence of tRNA-dependent pathways correlates with high cysteine content in methanogenic Archaea.

Klipcan L, Frenkel-Morgenstern M, Safro MG.

Trends Genet. 2008 Feb;24(2):59-63. doi: 10.1016/j.tig.2007.11.007. Epub 2008 Jan 14.

PMID:
18192060
10.

Non-heme iron through the three domains of life.

Andreini C, Banci L, Bertini I, Elmi S, Rosato A.

Proteins. 2007 May 1;67(2):317-24.

PMID:
17286284
11.

The most conserved genome segments for life detection on Earth and other planets.

Isenbarger TA, Carr CE, Johnson SS, Finney M, Church GM, Gilbert W, Zuber MT, Ruvkun G.

Orig Life Evol Biosph. 2008 Dec;38(6):517-33. doi: 10.1007/s11084-008-9148-z. Epub 2008 Oct 14.

PMID:
18853276
12.

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC.

Engelen S, Vallenet D, Médigue C, Danchin A.

BMC Genomics. 2012 Feb 14;13:69. doi: 10.1186/1471-2164-13-69.

13.

The last common ancestor: what's in a name?

Delaye L, Becerra A, Lazcano A.

Orig Life Evol Biosph. 2005 Dec;35(6):537-54.

PMID:
16254691
14.

The origin of genes could be polyphyletic.

Di Giulio M.

Gene. 2008 Dec 15;426(1-2):39-46. doi: 10.1016/j.gene.2008.07.024. Epub 2008 Jul 29.

PMID:
18706983
15.

A phylogenetic view of bacterial ribonucleases.

Danchin A.

Prog Mol Biol Transl Sci. 2009;85:1-41. doi: 10.1016/S0079-6603(08)00801-5. Review.

PMID:
19215769
16.

Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage.

Higgs PG, Ran W.

Mol Biol Evol. 2008 Nov;25(11):2279-91. doi: 10.1093/molbev/msn173. Epub 2008 Aug 6.

PMID:
18687657
17.

tRNA-independent pretransfer editing by class I leucyl-tRNA synthetase.

Zhu B, Yao P, Tan M, Eriani G, Wang ED.

J Biol Chem. 2009 Feb 6;284(6):3418-24. doi: 10.1074/jbc.M806717200. Epub 2008 Dec 9.

18.

Persistence drives gene clustering in bacterial genomes.

Fang G, Rocha EP, Danchin A.

BMC Genomics. 2008 Jan 7;9:4. doi: 10.1186/1471-2164-9-4.

19.

Toward a more complete view of tRNA biology.

Giegé R.

Nat Struct Mol Biol. 2008 Oct;15(10):1007-14. doi: 10.1038/nsmb.1498. Epub 2008 Oct 6.

PMID:
18836497
20.

The tree of life viewed through the contents of genomes.

House CH.

Methods Mol Biol. 2009;532:141-61. doi: 10.1007/978-1-60327-853-9_8. Review.

PMID:
19271183

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