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Items: 1 to 20 of 102


Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).

Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA.

Genetics. 2007 May;176(1):379-90. Epub 2007 Mar 4.


Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.

Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, Ammiraju JS, Kudrna D, Kim HR, Ware D, Wing RA, San Miguel P, Jackson SA.

BMC Genomics. 2006 Aug 8;7:199.


Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.

Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M.

Genetics. 2014 Apr;196(4):937-49. doi: 10.1534/genetics.113.159970. Epub 2014 Jan 14.


Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.

Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA.

BMC Genomics. 2011 Mar 8;12:142. doi: 10.1186/1471-2164-12-142.


Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.

Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, Bera J, Weaver B, Jin S, Johri S, Reardon M, Webb K, Hill J, Moffat K, Tallon L, Van Aken S, Lewis M, Utterback T, Feldblyum T, Zismann V, Iobst S, Hsiao J, de Vazeille AR, Salzberg SL, White O, Fraser C, Yu Y, Kim H, Rambo T, Currie J, Collura K, Kernodle-Thompson S, Wei F, Kudrna K, Ammiraju JS, Luo M, Goicoechea JL, Wing RA, Henry D, Oates R, Palmer M, Pries G, Saski C, Simmons J, Soderlund C, Nelson W, de la Bastide M, Spiegel L, Nascimento L, Huang E, Preston R, Zutavern T, Palmer L, O'Shaughnessy A, Dike S, McCombie WR, Minx P, Cordum H, Wilson R, Jin W, Lee HR, Jiang J, Jackson S; Rice Chromosome 3 Sequencing Consortium.

Genome Res. 2005 Sep;15(9):1284-91. Epub 2005 Aug 18.


A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.

Figueira TR, Okura V, Rodrigues da Silva F, Jose da Silva M, Kudrna D, Ammiraju JS, Talag J, Wing R, Arruda P.

BMC Res Notes. 2012 Apr 23;5:185. doi: 10.1186/1756-0500-5-185.


[Isolation and characterization of the centromeric BAC clones from different genomes in genus Oryza].

Yi CD, Gong ZY, Liang GH, Wang FH, Tang SZ, Gu MH.

Yi Chuan. 2007 Jul;29(7):851-8. Chinese.


A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

Gu YQ, Ma Y, Huo N, Vogel JP, You FM, Lazo GR, Nelson WM, Soderlund C, Dvorak J, Anderson OD, Luo MC.

BMC Genomics. 2009 Oct 27;10:496. doi: 10.1186/1471-2164-10-496.


A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1.

Kanamori H, Fujisawa M, Katagiri S, Oono Y, Fujisawa H, Karasawa W, Kurita K, Sasaki H, Mori S, Hamada M, Mukai Y, Yazawa T, Mizuno H, Namiki N, Sasaki T, Katayose Y, Matsumoto T, Wu J.

Plant J. 2013 Nov;76(4):699-708. doi: 10.1111/tpj.12317. Epub 2013 Oct 5.


Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.


Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization.

Jena KK, Ballesfin ML, Vinarao RB.

Theor Appl Genet. 2016 Oct;129(10):1873-86. doi: 10.1007/s00122-016-2745-8. Epub 2016 Jun 18.


Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies.

Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M.

Plant J. 2014 Mar;77(5):795-805. doi: 10.1111/tpj.12412. Epub 2014 Feb 3.


Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.

Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L.

Plant J. 2010 Sep;63(6):990-1003. doi: 10.1111/j.1365-313X.2010.04293.x.


Analysis of collinear regions of Oryza AA and CC genomes.

Feng Q, Huang T, Zhao Q, Zhu J, Lin Z, Han B.

J Genet Genomics. 2009 Nov;36(11):667-77. doi: 10.1016/S1673-8527(08)60159-9. Erratum in: J Genet Genomics. 2009 Dec;36(12):744.


Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.

Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, Jackson SA, Soderlund C, Wing RA.

Genome Biol. 2008;9(2):R45. doi: 10.1186/gb-2008-9-2-r45. Epub 2008 Feb 28.


Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome.

Ragupathy R, Rathinavelu R, Cloutier S.

BMC Genomics. 2011 May 9;12:217. doi: 10.1186/1471-2164-12-217.


A BAC end view of the Musa acuminata genome.

Cheung F, Town CD.

BMC Plant Biol. 2007 Jun 11;7:29.


Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G.

BMC Genomics. 2010 Nov 24;11:656. doi: 10.1186/1471-2164-11-656.


The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.

Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.

Plant Mol Biol. 2005 Sep;59(1):53-62.


Generation of a BAC-based physical map of the melon genome.

González VM, Garcia-Mas J, Arús P, Puigdomènech P.

BMC Genomics. 2010 May 28;11:339. doi: 10.1186/1471-2164-11-339.

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