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Items: 1 to 20 of 94

1.

Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta).

Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ.

Ann Bot. 2007 Apr;99(4):747-53. Epub 2007 Mar 2.

2.
3.

Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes.

Oliver MJ, Murdock AG, Mishler BD, Kuehl JV, Boore JL, Mandoli DF, Everett KD, Wolf PG, Duffy AM, Karol KG.

BMC Genomics. 2010 Feb 27;11:143. doi: 10.1186/1471-2164-11-143.

4.

The phylogeny of mosses - addressing open issues with a new mitochondrial locus: group I intron cobi420.

Wahrmund U, Quandt D, Knoop V.

Mol Phylogenet Evol. 2010 Feb;54(2):417-26. doi: 10.1016/j.ympev.2009.09.031. Epub 2009 Oct 21.

PMID:
19853052
5.

Complete plastid genome sequencing of Trochodendraceae reveals a significant expansion of the inverted repeat and suggests a Paleogene divergence between the two extant species.

Sun YX, Moore MJ, Meng AP, Soltis PS, Soltis DE, Li JQ, Wang HC.

PLoS One. 2013;8(4):e60429. doi: 10.1371/journal.pone.0060429. Epub 2013 Apr 5.

6.

Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.

Ruhlman T, Lee SB, Jansen RK, Hostetler JB, Tallon LJ, Town CD, Daniell H.

BMC Genomics. 2006 Aug 31;7:222.

7.

Phylogenetic inference rejects sporophyte based classification of the Funariaceae (Bryophyta): rapid radiation suggests rampant homoplasy in sporophyte evolution.

Liu Y, Budke JM, Goffinet B.

Mol Phylogenet Evol. 2012 Jan;62(1):130-45. doi: 10.1016/j.ympev.2011.09.010. Epub 2011 Sep 22.

PMID:
21971055
8.

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids.

Cai Z, Penaflor C, Kuehl JV, Leebens-Mack J, Carlson JE, dePamphilis CW, Boore JL, Jansen RK.

BMC Evol Biol. 2006 Oct 4;6:77.

9.

Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications.

Cai J, Ma PF, Li HT, Li DZ.

PLoS One. 2015 Nov 13;10(11):e0142705. doi: 10.1371/journal.pone.0142705. eCollection 2015.

10.

350 my of mitochondrial genome stasis in mosses, an early land plant lineage.

Liu Y, Medina R, Goffinet B.

Mol Biol Evol. 2014 Oct;31(10):2586-91. doi: 10.1093/molbev/msu199. Epub 2014 Jun 30.

PMID:
24980738
11.

Development of eight mitochondrial markers for Funariaceae (Musci) and their amplification success in other mosses.

Liu Y, Moskwa NL, Goffinet B.

Am J Bot. 2012 Feb;99(2):e62-5. doi: 10.3732/ajb.1100402. Epub 2012 Jan 24.

12.

Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences.

Nozaki H, Ohta N, Matsuzaki M, Misumi O, Kuroiwa T.

J Mol Evol. 2003 Oct;57(4):377-82.

PMID:
14708571
13.

A review of molecular-clock calibrations and substitution rates in liverworts, mosses, and hornworts, and a timeframe for a taxonomically cleaned-up genus Nothoceros.

Villarreal JC, Renner SS.

Mol Phylogenet Evol. 2014 Sep;78:25-35. doi: 10.1016/j.ympev.2014.04.014. Epub 2014 Apr 30.

PMID:
24792087
14.

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny.

Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.

Mol Biol Evol. 2007 Aug;24(8):1832-42. Epub 2007 May 23.

PMID:
17522086
15.

The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae.

Doyle JJ, Doyle JL, Ballenger JA, Palmer JD.

Mol Phylogenet Evol. 1996 Apr;5(2):429-38.

PMID:
8728401
16.

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat.

Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF.

Am J Bot. 2015 Jul;102(7):1115-27. doi: 10.3732/ajb.1500184. Epub 2015 Jul 14.

17.

Bryophyte-specific primers for retrieving plastid genes suitable for phylogenetic inference.

Chang Y, Graham SW.

Am J Bot. 2011 May;98(5):e109-13. doi: 10.3732/ajb.1000321.

18.

ASAP: amplification, sequencing & annotation of plastomes.

Dhingra A, Folta KM.

BMC Genomics. 2005 Dec 7;6:176.

19.

The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. sequence evaluation and plastome evolution.

Greiner S, Wang X, Rauwolf U, Silber MV, Mayer K, Meurer J, Haberer G, Herrmann RG.

Nucleic Acids Res. 2008 Apr;36(7):2366-78. doi: 10.1093/nar/gkn081. Epub 2008 Feb 24.

20.

The evolution of chloroplast genome structure in ferns.

Wolf PG, Roper JM, Duffy AM.

Genome. 2010 Sep;53(9):731-8. doi: 10.1139/g10-061.

PMID:
20924422

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