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Items: 1 to 20 of 161

1.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL.

Microb Ecol. 2007 Apr;53(3):371-83. Epub 2007 Mar 2.

PMID:
17334858
2.

Microbial diversity in uranium mining-impacted soils as revealed by high-density 16S microarray and clone library.

Rastogi G, Osman S, Vaishampayan PA, Andersen GL, Stetler LD, Sani RK.

Microb Ecol. 2010 Jan;59(1):94-108. doi: 10.1007/s00248-009-9598-5.

PMID:
19888627
3.

Environmental microarray analyses of Antarctic soil microbial communities.

Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA.

ISME J. 2009 Mar;3(3):340-51. doi: 10.1038/ismej.2008.111. Epub 2008 Nov 20.

PMID:
19020556
4.

Analysis of bacterial communities in soil by use of denaturing gradient gel electrophoresis and clone libraries, as influenced by different reverse primers.

Brons JK, van Elsas JD.

Appl Environ Microbiol. 2008 May;74(9):2717-27. doi: 10.1128/AEM.02195-07. Epub 2008 Feb 29.

5.

Review and re-analysis of domain-specific 16S primers.

Baker GC, Smith JJ, Cowan DA.

J Microbiol Methods. 2003 Dec;55(3):541-55. Review.

PMID:
14607398
6.

Advantage of using inosine at the 3' termini of 16S rRNA gene universal primers for the study of microbial diversity.

Ben-Dov E, Shapiro OH, Siboni N, Kushmaro A.

Appl Environ Microbiol. 2006 Nov;72(11):6902-6. Epub 2006 Sep 1.

7.

[Analysis of soil bacterial diversity by using the 16S rRNA gene library].

Liu W, Mao Z, Yang Y, Xie B.

Wei Sheng Wu Xue Bao. 2008 Oct;48(10):1344-50. Chinese.

PMID:
19160815
8.

Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria.

Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL.

Environ Microbiol. 2006 Feb;8(2):289-307.

PMID:
16423016
9.

Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.

Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M, Kurokawa K.

DNA Res. 2014;21(2):217-27. doi: 10.1093/dnares/dst052. Epub 2013 Nov 25.

10.

Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester.

Chouari R, Le Paslier D, Daegelen P, Ginestet P, Weissenbach J, Sghir A.

Environ Microbiol. 2005 Aug;7(8):1104-15.

PMID:
16011748
11.

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure.

Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB.

Environ Microbiol. 2009 May;11(5):1292-302. doi: 10.1111/j.1462-2920.2008.01857.x. Epub 2009 Feb 9.

12.

Comparative evaluation of prokaryotic 16S rDNA clone libraries and SSCP in groundwater samples.

Larentis M, Alfreider A.

J Basic Microbiol. 2011 Jun;51(3):330-5. doi: 10.1002/jobm.201000295. Epub 2011 Feb 7.

PMID:
21298687
13.

[Prokaryotic microbial diversity of the ancient salt deposits in the Kunming Salt Mine, P.R. China].

Xiao W, Peng Q, Liu HW, Wen ML, Cui XL, Yang YL, Duan DC, Chen W, Deng L, Li QY, Chen YG, Wang ZG, Ren Z, Liu JH.

Wei Sheng Wu Xue Bao. 2007 Apr;47(2):295-300. Chinese.

PMID:
17552238
14.

Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.

Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu SE, Wang N.

Appl Environ Microbiol. 2009 Mar;75(6):1566-74. doi: 10.1128/AEM.02404-08. Epub 2009 Jan 16.

15.

Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera.

Kyselková M, Kopecký J, Felföldi T, Cermák L, Omelka M, Grundmann GL, Moënne-Loccoz Y, Ságová-Marecková M.

Antonie Van Leeuwenhoek. 2008 Oct;94(3):439-53. doi: 10.1007/s10482-008-9261-z. Epub 2008 Jul 4.

PMID:
18600470
16.

Comprehensive census of bacteria in clean rooms by using DNA microarray and cloning methods.

La Duc MT, Osman S, Vaishampayan P, Piceno Y, Andersen G, Spry JA, Venkateswaran K.

Appl Environ Microbiol. 2009 Oct;75(20):6559-67. doi: 10.1128/AEM.01073-09. Epub 2009 Aug 21.

17.

Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria.

Wang J, Muyzer G, Bodelier PL, Laanbroek HJ.

ISME J. 2009 Jun;3(6):715-25. doi: 10.1038/ismej.2009.7. Epub 2009 Feb 19.

PMID:
19225553
18.

Molecular analyses of microbial diversity associated with the Lonar soda lake in India: an impact crater in a basalt area.

Wani AA, Surakasi VP, Siddharth J, Raghavan RG, Patole MS, Ranade D, Shouche YS.

Res Microbiol. 2006 Dec;157(10):928-37. Epub 2006 Oct 9.

PMID:
17070674
19.

Bacterial diversity in the bacterioneuston (sea surface microlayer): the bacterioneuston through the looking glass.

Franklin MP, McDonald IR, Bourne DG, Owens NJ, Upstill-Goddard RC, Murrell JC.

Environ Microbiol. 2005 May;7(5):723-36.

PMID:
15819854
20.

Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes.

Eiler A, Bertilsson S.

Environ Microbiol. 2004 Dec;6(12):1228-43. Erratum in: Environ Microbiol. 2007 Mar;9(3):838.

PMID:
15560821

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