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Items: 1 to 20 of 68

1.

Systematic overestimation of gene gain through false diagnosis of gene absence.

Zhaxybayeva O, Nesbø CL, Doolittle WF.

Genome Biol. 2007;8(2):402.

3.
4.

Comparative genomics of gene-family size in closely related bacteria.

Pushker R, Mira A, Rodríguez-Valera F.

Genome Biol. 2004;5(4):R27. Epub 2004 Mar 18.

5.

High rates of lateral gene transfer are not due to false diagnosis of gene absence.

Hao W, Golding GB.

Gene. 2008 Sep 15;421(1-2):27-31. doi: 10.1016/j.gene.2008.06.015. Epub 2008 Jun 14.

PMID:
18601986
6.

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B.

J Mol Evol. 2004 May;58(5):527-39.

PMID:
15170256
7.
8.

Global analysis of bacterial transcription factors to predict cellular target processes.

Doerks T, Andrade MA, Lathe W 3rd, von Mering C, Bork P.

Trends Genet. 2004 Mar;20(3):126-31. Review.

PMID:
15049306
9.

Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes.

Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil MA, Domann E, Schaffrath S, Kärst U, Goesmann A, Oehm S, Pühler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T.

BMC Genomics. 2012 Apr 24;13:144. doi: 10.1186/1471-2164-13-144.

10.

The human microbiome: a hot spot of microbial horizontal gene transfer.

Liu L, Chen X, Skogerbø G, Zhang P, Chen R, He S, Huang DW.

Genomics. 2012 Nov;100(5):265-70. doi: 10.1016/j.ygeno.2012.07.012. Epub 2012 Jul 25.

11.

Gene family content-based phylogeny of prokaryotes: the effect of criteria for inferring homology.

Hughes AL, Ekollu V, Friedman R, Rose JR.

Syst Biol. 2005 Apr;54(2):268-76.

PMID:
16012097
12.

Detection and quantitative assessment of horizontal gene transfer.

Zhaxybayeva O.

Methods Mol Biol. 2009;532:195-213. doi: 10.1007/978-1-60327-853-9_11.

PMID:
19271186
13.

Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns.

Zaneveld JR, Nemergut DR, Knight R.

Microbiology. 2008 Jan;154(Pt 1):1-15. doi: 10.1099/mic.0.2007/011833-0. Review.

PMID:
18174121
14.

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

Calteau A, Gouy M, Perrière G.

J Mol Evol. 2005 May;60(5):557-65.

PMID:
15983865
15.

Highways of gene sharing in prokaryotes.

Beiko RG, Harlow TJ, Ragan MA.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14332-7. Epub 2005 Sep 21.

16.

Estimating the extent of horizontal gene transfer in metagenomic sequences.

Tamames J, Moya A.

BMC Genomics. 2008 Mar 24;9:136. doi: 10.1186/1471-2164-9-136.

17.

GRAST: a new way of genome reduction analysis using comparative genomics.

Toft C, Fares MA.

Bioinformatics. 2006 Jul 1;22(13):1551-61. Epub 2006 Apr 6.

PMID:
16601001
18.

Quartet mapping and the extent of lateral transfer in bacterial genomes.

Daubin V, Ochman H.

Mol Biol Evol. 2004 Jan;21(1):86-9. Epub 2003 Aug 29.

PMID:
12949130
19.

Using the COG database to improve gene recognition in complete genomes.

Natale DA, Galperin MY, Tatusov RL, Koonin EV.

Genetica. 2000;108(1):9-17.

PMID:
11145426
20.

Do different surrogate methods detect lateral genetic transfer events of different relative ages?

Ragan MA, Harlow TJ, Beiko RG.

Trends Microbiol. 2006 Jan;14(1):4-8. Epub 2005 Dec 13.

PMID:
16356716

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