Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 77

1.

Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

Deshayes C, Perrodou E, Gallien S, Euphrasie D, Schaeffer C, Van-Dorsselaer A, Poch O, Lecompte O, Reyrat JM.

Genome Biol. 2007;8(2):R20.

2.

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Perrodou E, Deshayes C, Muller J, Schaeffer C, Van Dorsselaer A, Ripp R, Poch O, Reyrat JM, Lecompte O.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D338-43.

3.

Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.

Deshayes C, Perrodou E, Euphrasie D, Frapy E, Poch O, Bifani P, Lecompte O, Reyrat JM.

BMC Evol Biol. 2008 Mar 6;8:78. doi: 10.1186/1471-2148-8-78.

4.

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

Gallien S, Perrodou E, Carapito C, Deshayes C, Reyrat JM, Van Dorsselaer A, Poch O, Schaeffer C, Lecompte O.

Genome Res. 2009 Jan;19(1):128-35. doi: 10.1101/gr.081901.108. Epub 2008 Oct 27.

6.
7.

Amino acid translation program for full-length cDNA sequences with frameshift errors.

Fukunishi Y, Hayashizaki Y.

Physiol Genomics. 2001 Mar 8;5(2):81-7.

PMID:
11242592
8.

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF.

Zhao L, Liu L, Leng W, Wei C, Jin Q.

BMC Genomics. 2011 Oct 28;12:528. doi: 10.1186/1471-2164-12-528.

9.
10.

Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis.

Waagmeester A, Thompson J, Reyrat JM.

Trends Microbiol. 2005 Nov;13(11):505-9. Epub 2005 Sep 2.

PMID:
16140533
11.
12.

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons.

Ranwez V, Harispe S, Delsuc F, Douzery EJ.

PLoS One. 2011;6(9):e22594. doi: 10.1371/journal.pone.0022594. Epub 2011 Sep 16.

13.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, M├ędigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

14.

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry.

Potgieter MG, Nakedi KC, Ambler JM, Nel AJ, Garnett S, Soares NC, Mulder N, Blackburn JM.

Front Microbiol. 2016 Apr 5;7:427. doi: 10.3389/fmicb.2016.00427. eCollection 2016.

15.

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.

Antonov I, Baranov P, Borodovsky M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D152-6. doi: 10.1093/nar/gks1062. Epub 2012 Nov 17.

16.

A computational genomics pipeline for prokaryotic sequencing projects.

Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, Jordan IK.

Bioinformatics. 2010 Aug 1;26(15):1819-26. doi: 10.1093/bioinformatics/btq284. Epub 2010 Jun 2.

17.

Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus.

Cobucci-Ponzano B, Guzzini L, Benelli D, Londei P, Perrodou E, Lecompte O, Tran D, Sun J, Wei J, Mathur EJ, Rossi M, Moracci M.

J Proteome Res. 2010 May 7;9(5):2496-507. doi: 10.1021/pr901166q.

PMID:
20192274
18.

Upregulation of a histone-like protein in dormant Mycobacterium smegmatis.

Lee BH, Murugasu-Oei B, Dick T.

Mol Gen Genet. 1998 Dec;260(5):475-9.

PMID:
9894918
19.

Phylogenetic relationships and classification of thiolases and thiolase-like proteins of Mycobacterium tuberculosis and Mycobacterium smegmatis.

Anbazhagan P, Harijan RK, Kiema TR, Janardan N, Murthy MR, Michels PA, Juffer AH, Wierenga RK.

Tuberculosis (Edinb). 2014 Jul;94(4):405-12. doi: 10.1016/j.tube.2014.03.003. Epub 2014 Apr 4.

PMID:
24825023
20.

Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes.

Tse H, Cai JJ, Tsoi HW, Lam EP, Yuen KY.

BMC Genomics. 2010 Sep 9;11:491. doi: 10.1186/1471-2164-11-491.

Supplemental Content

Support Center