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Items: 1 to 20 of 137

1.

Global transcription machinery engineering: a new approach for improving cellular phenotype.

Alper H, Stephanopoulos G.

Metab Eng. 2007 May;9(3):258-67. Epub 2007 Jan 8.

PMID:
17292651
2.

Global strain engineering by mutant transcription factors.

Lanza AM, Alper HS.

Methods Mol Biol. 2011;765:253-74. doi: 10.1007/978-1-61779-197-0_15.

PMID:
21815097
3.

ppGpp: a global regulator in Escherichia coli.

Magnusson LU, Farewell A, Nyström T.

Trends Microbiol. 2005 May;13(5):236-42. Review.

PMID:
15866041
4.

Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?

Geertz M, Travers A, Mehandziska S, Sobetzko P, Chandra-Janga S, Shimamoto N, Muskhelishvili G.

MBio. 2011 Aug 2;2(4). pii: e00034-11. doi: 10.1128/mBio.00034-11. Print 2011.

5.

Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study.

Grainger DC, Busby SJ.

Adv Appl Microbiol. 2008;65:93-113. doi: 10.1016/S0065-2164(08)00604-7. Review. No abstract available.

PMID:
19026863
6.

The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription.

Bernardo LM, Johansson LU, Solera D, Skärfstad E, Shingler V.

Mol Microbiol. 2006 May;60(3):749-64.

7.

Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria.

Grainger DC, Lee DJ, Busby SJ.

Curr Opin Microbiol. 2009 Oct;12(5):531-5. doi: 10.1016/j.mib.2009.08.006. Epub 2009 Sep 15. Review.

PMID:
19762273
9.

Region 1.2 of the RNA polymerase sigma subunit controls recognition of the -10 promoter element.

Zenkin N, Kulbachinskiy A, Yuzenkova Y, Mustaev A, Bass I, Severinov K, Brodolin K.

EMBO J. 2007 Feb 21;26(4):955-64. Epub 2007 Feb 1.

10.

Both regions 4.1 and 4.2 of E. coli sigma(70) are together required for binding to bacteriophage T4 AsiA in vivo.

Sharma UK, Chatterji D.

Gene. 2006 Jul 5;376(1):133-43. Epub 2006 Mar 20.

PMID:
16545925
11.

Engineering yeast transcription machinery for improved ethanol tolerance and production.

Alper H, Moxley J, Nevoigt E, Fink GR, Stephanopoulos G.

Science. 2006 Dec 8;314(5805):1565-8.

12.

Significantly improved solvent tolerance of Escherichia coli by global transcription machinery engineering.

Zhang F, Qian X, Si H, Xu G, Han R, Ni Y.

Microb Cell Fact. 2015 Nov 5;14:175. doi: 10.1186/s12934-015-0368-4.

13.

Properties of RNA polymerase bypass mutants: implications for the role of ppGpp and its co-factor DksA in controlling transcription dependent on sigma54.

Szalewska-Palasz A, Johansson LU, Bernardo LM, Skärfstad E, Stec E, Brännström K, Shingler V.

J Biol Chem. 2007 Jun 22;282(25):18046-56. Epub 2007 Apr 24.

14.

Expanding the metabolic engineering toolbox: more options to engineer cells.

Tyo KE, Alper HS, Stephanopoulos GN.

Trends Biotechnol. 2007 Mar;25(3):132-7. Epub 2007 Jan 24. Review.

PMID:
17254656
15.

General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors.

Gourse RL, Ross W, Rutherford ST.

J Bacteriol. 2006 Jul;188(13):4589-91. Review. No abstract available.

16.

Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.

Johansen J, Eriksen M, Kallipolitis B, Valentin-Hansen P.

J Mol Biol. 2008 Oct 31;383(1):1-9. doi: 10.1016/j.jmb.2008.06.058. Epub 2008 Jun 28.

PMID:
18619465
17.

General organisational principles of the transcriptional regulation system: a tree or a circle?

Muskhelishvili G, Sobetzko P, Geertz M, Berger M.

Mol Biosyst. 2010 Apr;6(4):662-76. doi: 10.1039/b909192k. Epub 2010 Feb 8. Review.

PMID:
20237643
18.

Remodeling and activation of Escherichia coli RNA polymerase by osmolytes.

Gralla JD, Huo YX.

Biochemistry. 2008 Dec 16;47(50):13189-96. doi: 10.1021/bi801075x.

PMID:
19053283
19.

Stress-induced mutagenesis in bacteria.

Bjedov I, Tenaillon O, Gérard B, Souza V, Denamur E, Radman M, Taddei F, Matic I.

Science. 2003 May 30;300(5624):1404-9.

20.

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