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Items: 1 to 20 of 90

1.

A tale of two templates: automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices.

Tenney AE, Wu JQ, Langton L, Klueh P, Quatrano R, Brent MR.

Genome Res. 2007 Feb;17(2):212-8. Epub 2007 Jan 8.

2.

Identifying insertion mutations by whole-genome sequencing.

Smith HE.

Biotechniques. 2011 Feb;50(2):96-7. doi: 10.2144/000113600.

3.

HMM sampling and applications to gene finding and alternative splicing.

Cawley SL, Pachter L.

Bioinformatics. 2003 Oct;19 Suppl 2:ii36-41.

PMID:
14534169
4.

Reverse transcriptase template switching and false alternative transcripts.

Cocquet J, Chong A, Zhang G, Veitia RA.

Genomics. 2006 Jul;88(1):127-31. Epub 2006 Feb 2.

5.

Mapping multiple co-sequenced T-DNA integration sites within the Arabidopsis genome.

Presting GG.

Bioinformatics. 2003 Mar 22;19(5):579-86.

PMID:
12651715
6.

Rapid construction of sequencing templates by random insertion of antibiotic resistance genes.

Nabirochkina EN, Georgieva SG, Krasnov AN, Soldatov AV.

Biotechniques. 2002 Feb;32(2):300, 302-4.

PMID:
11848406
7.

Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro.

Klarmann GJ, Schauber CA, Preston BD.

J Biol Chem. 1993 May 5;268(13):9793-802. Erratum in: J Biol Chem 1993 Jun 25;268(18):13764.

8.

Bioinformatics detection of alternative splicing.

Kim N, Lee C.

Methods Mol Biol. 2008;452:179-97. doi: 10.1007/978-1-60327-159-2_9. Review.

PMID:
18566765
9.

Genome wide identification and classification of alternative splicing based on EST data.

Gupta S, Zink D, Korn B, Vingron M, Haas SA.

Bioinformatics. 2004 Nov 1;20(16):2579-85. Epub 2004 Apr 29.

PMID:
15117759
10.

[The method of template construction for sequencing extended DNA fragments].

Ermolaeva MA, Soldatov AV, Nabirochkina EN.

Mol Biol (Mosk). 2002 Nov-Dec;36(6):1021-5. Russian.

PMID:
12500540
11.

SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.

Ryan MC, Zeeberg BR, Caplen NJ, Cleland JA, Kahn AB, Liu H, Weinstein JN.

BMC Bioinformatics. 2008 Jul 18;9:313. doi: 10.1186/1471-2105-9-313.

12.

DNA sequencing using ultra small amounts of reagents and template.

Kawamoto K, Okano K, Kambara H.

DNA Res. 1994;1(6):297-301.

PMID:
7719925
14.

Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates.

Lewin J, Schmitt AO, Adorj√°n P, Hildmann T, Piepenbrock C.

Bioinformatics. 2004 Nov 22;20(17):3005-12. Epub 2004 Jul 9.

PMID:
15247106
15.

Quantification of single nucleotide polymorphisms by automated DNA sequencing.

Qiu P, Soder GJ, Sanfiorenzo VJ, Wang L, Greene JR, Fritz MA, Cai XY.

Biochem Biophys Res Commun. 2003 Sep 19;309(2):331-8.

PMID:
12951054
16.

Lower bounds on multiple sequence alignment using exact 3-way alignment.

Colbourn CJ, Kumar S.

BMC Bioinformatics. 2007 Apr 30;8:140.

17.

Efficient filtering methods for clustering cDNAs with spliced sequence alignment.

Shibuya T, Kashima H, Konagaya A.

Bioinformatics. 2004 Jan 1;20(1):29-39.

PMID:
14693805
18.

PCR-based screening for insertional mutants.

Stepanova AN, Alonso JM.

Methods Mol Biol. 2006;323:163-72.

PMID:
16739576
19.

iMapper: a web application for the automated analysis and mapping of insertional mutagenesis sequence data against Ensembl genomes.

Kong J, Zhu F, Stalker J, Adams DJ.

Bioinformatics. 2008 Dec 15;24(24):2923-5. doi: 10.1093/bioinformatics/btn541. Epub 2008 Oct 30.

20.

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