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Items: 1 to 20 of 1756

1.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

2.

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W143-7. Epub 2007 Jun 1.

3.

ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q.

BMC Genomics. 2009 Apr 21;10:174. doi: 10.1186/1471-2164-10-174.

4.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

5.

High-throughput identification, database storage and analysis of SNPs in EST sequences.

Useche FJ, Gao G, Harafey M, Rafalski A.

Genome Inform. 2001;12:194-203.

PMID:
11791238
6.

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.

7.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

8.

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.

9.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
10.

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9. doi: 10.1186/1471-2105-9-S2-S9.

11.

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).

Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.

BMC Genomics. 2007 May 29;8:134.

12.

A hitchhiker's guide to expressed sequence tag (EST) analysis.

Nagaraj SH, Gasser RB, Ranganathan S.

Brief Bioinform. 2007 Jan;8(1):6-21. Epub 2006 May 23. Review.

PMID:
16772268
13.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

14.

WildSilkbase: an EST database of wild silkmoths.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J.

BMC Genomics. 2008 Jul 17;9:338. doi: 10.1186/1471-2164-9-338.

15.

GARSA: genomic analysis resources for sequence annotation.

Dávila AM, Lorenzini DM, Mendes PN, Satake TS, Sousa GR, Campos LM, Mazzoni CJ, Wagner G, Pires PF, Grisard EC, Cavalcanti MC, Campos ML.

Bioinformatics. 2005 Dec 1;21(23):4302-3. Epub 2005 Oct 6.

PMID:
16210424
16.

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.

Merelli I, Caprera A, Stella A, Del Corvo M, Milanesi L, Lazzari B.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S2. doi: 10.1186/1471-2105-10-S12-S2.

17.

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

18.

Construction and characterization of a rock-cluster-based EST analysis pipeline.

Zhu T, Zhou J, An Y, Zhou J, Li H, Xu G, Ma D.

Comput Biol Chem. 2006 Feb;30(1):81-6. Erratum in: Comput Biol Chem. 2008 Dec;32(6):469.

PMID:
16321574
19.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

20.

ESTIMA, a tool for EST management in a multi-project environment.

Kumar CG, LeDuc R, Gong G, Roinishivili L, Lewin HA, Liu L.

BMC Bioinformatics. 2004 Nov 4;5:176.

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