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Items: 1 to 20 of 113

1.

Learning about protein hydrogen bonding by minimizing contrastive divergence.

Podtelezhnikov AA, Ghahramani Z, Wild DL.

Proteins. 2007 Feb 15;66(3):588-99.

PMID:
17109405
2.

Short hydrogen bonds in proteins.

Rajagopal S, Vishveshwara S.

FEBS J. 2005 Apr;272(8):1819-32.

3.

Satisfying hydrogen bonding potential in proteins.

McDonald IK, Thornton JM.

J Mol Biol. 1994 May 20;238(5):777-93.

PMID:
8182748
4.

Geometric characteristics of hydrogen bonds involving sulfur atoms in proteins.

Zhou P, Tian F, Lv F, Shang Z.

Proteins. 2009 Jul;76(1):151-63. doi: 10.1002/prot.22327.

PMID:
19089987
5.

Conserved thermodynamic contributions of backbone hydrogen bonds in a protein fold.

Wang M, Wales TE, Fitzgerald MC.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2600-4. Epub 2006 Feb 10.

6.

Strong and weak hydrogen bonds in the protein-ligand interface.

Panigrahi SK, Desiraju GR.

Proteins. 2007 Apr 1;67(1):128-141.

PMID:
17206656
7.
8.

Geometric criteria of hydrogen bonds in proteins and identification of "bifurcated" hydrogen bonds.

Torshin IY, Weber IT, Harrison RW.

Protein Eng. 2002 May;15(5):359-63.

PMID:
12034855
9.

Helmholtz free energy of peptide hydrogen bonds in proteins.

Sippl MJ.

J Mol Biol. 1996 Aug 2;260(5):644-8.

PMID:
8709145
10.
11.

Strong and weak hydrogen bonds in protein-ligand complexes of kinases: a comparative study.

Panigrahi SK.

Amino Acids. 2008 May;34(4):617-33. doi: 10.1007/s00726-007-0015-4. Epub 2008 Jan 8.

PMID:
18180869
12.

Are aromatic carbon donor hydrogen bonds linear in proteins?

Nanda V, Schmiedekamp A.

Proteins. 2008 Feb 1;70(2):489-97.

PMID:
17705268
14.

Ab initio study of hydrogen-bond formation between aliphatic and phenolic hydroxy groups and selected amino acid side chains.

Nagy PI, Erhardt PW.

J Phys Chem A. 2008 May 8;112(18):4342-54. doi: 10.1021/jp7108847. Epub 2008 Mar 29.

PMID:
18373368
15.

[Double and bifurcated hydrogen bonds in alpha-helices of globular proteins].

Faĭn AV, Berezovskiĭ IN, Chekhov VO, Ukrainskiĭ DL, Esipova NG.

Biofizika. 2001 Nov-Dec;46(6):969-77. Russian.

PMID:
11771295
16.

Strength of Calpha-H...O=C hydrogen bonds in transmembrane proteins.

Park H, Yoon J, Seok C.

J Phys Chem B. 2008 Jan 24;112(3):1041-8. Epub 2007 Dec 22.

PMID:
18154287
17.

Estimation on the intramolecular 10-membered ring N-H...O=C hydrogen-bonding energies in glycine and alanine peptides.

Zhang Y, Wang CS.

J Comput Chem. 2009 Jun;30(8):1251-60. doi: 10.1002/jcc.21141.

PMID:
18991303
18.

Estimation of N-H...O=C intramolecular hydrogen bond energy in polypeptides.

Deshmukh MM, Gadre SR.

J Phys Chem A. 2009 Jul 9;113(27):7927-32. doi: 10.1021/jp9031207.

PMID:
19496581
19.

Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains.

Worth CL, Blundell TL.

Proteins. 2009 May 1;75(2):413-29. doi: 10.1002/prot.22248.

PMID:
18837037
20.

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