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Items: 1 to 20 of 111

1.

WormBase: new content and better access.

Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D506-10.

2.

WormBase: a multi-species resource for nematode biology and genomics.

Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7.

3.

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.

Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9.

4.

WormBase: better software, richer content.

Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, Lawson D, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin R, Spieth J, Stein LD, Sternberg PW.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D475-8.

5.

WormBase 2007.

Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D612-7.

6.

WormBase: methods for data mining and comparative genomics.

Harris TW, Stein LD.

Methods Mol Biol. 2006;351:31-50. Review.

PMID:
16988424
7.

WormBase: a cross-species database for comparative genomics.

Harris TW, Lee R, Schwarz E, Bradnam K, Lawson D, Chen W, Blasier D, Kenny E, Cunningham F, Kishore R, Chan J, Muller HM, Petcherski A, Thorisson G, Day A, Bieri T, Rogers A, Chen CK, Spieth J, Sternberg P, Durbin R, Stein LD.

Nucleic Acids Res. 2003 Jan 1;31(1):133-7.

8.

WormBase 2016: expanding to enable helminth genomic research.

Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217.

9.

WormBase 2012: more genomes, more data, new website.

Yook K, Harris TW, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, de la Cruz N, Duong A, Fang R, Ganesan U, Grove C, Howe K, Kadam S, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Nash B, Ozersky P, Paulini M, Raciti D, Rangarajan A, Schindelman G, Shi X, Schwarz EM, Ann Tuli M, Van Auken K, Wang D, Wang X, Williams G, Hodgkin J, Berriman M, Durbin R, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D735-41. doi: 10.1093/nar/gkr954.

10.

WormBase: a comprehensive resource for nematode research.

Harris TW, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen WJ, De La Cruz N, Davis P, Duesbury M, Fang R, Fernandes J, Han M, Kishore R, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D463-7. doi: 10.1093/nar/gkp952.

11.

WormBase 2014: new views of curated biology.

Harris TW, Baran J, Bieri T, Cabunoc A, Chan J, Chen WJ, Davis P, Done J, Grove C, Howe K, Kishore R, Lee R, Li Y, Muller HM, Nakamura C, Ozersky P, Paulini M, Raciti D, Schindelman G, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wong JD, Yook K, Schedl T, Hodgkin J, Berriman M, Kersey P, Spieth J, Stein L, Sternberg PW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D789-93. doi: 10.1093/nar/gkt1063.

12.

WormBase: network access to the genome and biology of Caenorhabditis elegans.

Stein L, Sternberg P, Durbin R, Thierry-Mieg J, Spieth J.

Nucleic Acids Res. 2001 Jan 1;29(1):82-6.

13.
14.

nGASP--the nematode genome annotation assessment project.

Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium., Stein LD.

BMC Bioinformatics. 2008 Dec 19;9:549. doi: 10.1186/1471-2105-9-549.

15.

Methods and strategies for gene structure curation in WormBase.

Williams GW, Davis PA, Rogers AS, Bieri T, Ozersky P, Spieth J.

Database (Oxford). 2011 May 3;2011:baq039. doi: 10.1093/database/baq039.

16.

Searching WormBase for information about Caenorhabditis elegans.

Schwarz EM, Sternberg PW.

Curr Protoc Bioinformatics. 2006 Jul;Chapter 1:Unit 1.8. doi: 10.1002/0471250953.bi0108s14.

PMID:
18428757
17.
18.

WormBase as an integrated platform for the C. elegans ORFeome.

Chen N, Lawson D, Bradnam K, Harris TW, Stein LD.

Genome Res. 2004 Oct;14(10B):2155-61.

19.

modMine: flexible access to modENCODE data.

Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1082-8. doi: 10.1093/nar/gkr921.

20.

Fundamentals of Comparative Genome Analysis in Caenorhabditis Nematodes.

Haag ES, Thomas CG.

Methods Mol Biol. 2015;1327:11-21. doi: 10.1007/978-1-4939-2842-2_2.

PMID:
26423964
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