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Items: 1 to 20 of 159

1.

A three-state model for DNA protein-coding regions.

Pinho AJ, Neves AJ, Afreixo V, Bastos CA, Ferreira PJ.

IEEE Trans Biomed Eng. 2006 Nov;53(11):2148-55.

PMID:
17073319
2.

Segmentation of short human exons based on spectral features of double curves.

Jiang R, Yan H.

Int J Data Min Bioinform. 2008;2(1):15-35.

PMID:
18399326
3.

Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence.

Yin C, Yau SS.

J Theor Biol. 2007 Aug 21;247(4):687-94. Epub 2007 Apr 10.

PMID:
17509616
4.

Detecting overlapping coding sequences with pairwise alignments.

Firth AE, Brown CM.

Bioinformatics. 2005 Feb 1;21(3):282-92. Epub 2004 Sep 3.

PMID:
15347574
5.

Multivariate entropy distance method for prokaryotic gene identification.

Ouyang Z, Zhu H, Wang J, She ZS.

J Bioinform Comput Biol. 2004 Jun;2(2):353-73.

PMID:
15297987
6.

A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.

Liang KC, Wang X, Anastassiou D.

Bioinformatics. 2008 Jan 1;24(1):46-55. Epub 2007 Nov 17.

PMID:
18024972
7.

Comparison of various algorithms for recognizing short coding sequences of human genes.

Gao F, Zhang CT.

Bioinformatics. 2004 Mar 22;20(5):673-81. Epub 2004 Feb 5.

PMID:
14764563
8.

Context-specific independence mixture modeling for positional weight matrices.

Georgi B, Schliep A.

Bioinformatics. 2006 Jul 15;22(14):e166-73.

PMID:
16873468
9.

Identification of coding and non-coding sequences using local Holder exponent formalism.

Kulkarni OC, Vigneshwar R, Jayaraman VK, Kulkarni BD.

Bioinformatics. 2005 Oct 15;21(20):3818-23. Epub 2005 Aug 23.

PMID:
16118261
10.

Statistical measures of the structure of genomic sequences: entropy, complexity, and position information.

Orlov YL, Te Boekhorst R, Abnizova II.

J Bioinform Comput Biol. 2006 Apr;4(2):523-36.

PMID:
16819800
11.

[Study of numerical mapping methods for DNA sequences].

Nini R, Lijun Q.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2005 Aug;22(4):681-5. Chinese.

PMID:
16156249
12.

Mutation model for nucleotide sequences based on crystal basis.

Minichini C, Sciarrino A.

Biosystems. 2006 Jun;84(3):191-206. Epub 2006 Jan 4.

PMID:
16387418
13.

CONSORF: a consensus prediction system for prokaryotic coding sequences.

Kang S, Yang SJ, Kim S, Bhak J.

Bioinformatics. 2007 Nov 15;23(22):3088-90. Epub 2007 Oct 31.

PMID:
17977885
14.

An adaptive window length strategy for eukaryotic CDS prediction.

Shakya DK, Saxena R, Sharma SN.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1241-52. doi: 10.1109/TCBB.2013.76.

PMID:
24384711
15.

Comparison of DNA sequences with protein sequences.

Pearson WR, Wood T, Zhang Z, Miller W.

Genomics. 1997 Nov 15;46(1):24-36.

PMID:
9403055
16.

A molecular method for a qualitative analysis of potentially coding sequences of DNA.

Christoffersen ML, Araújo ME, Moreira MA.

Braz J Biol. 2004 Aug;64(3A):383-98.

PMID:
15622837
17.

Transducers: an emerging probabilistic framework for modeling indels on trees.

Bradley RK, Holmes I.

Bioinformatics. 2007 Dec 1;23(23):3258-62. Epub 2007 Sep 5. No abstract available.

PMID:
17804440
18.

Detecting non-coding selective pressure in coding regions.

Chen H, Blanchette M.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S9.

19.

Comparative annotation of viral genomes with non-conserved gene structure.

de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 May 1;23(9):1080-9. Epub 2007 Mar 6.

PMID:
17341494
20.

Genomic alignment.

Hein J, Støvlbaek J.

J Mol Evol. 1994 Mar;38(3):310-6.

PMID:
8006999

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