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Prediction of Saccharomyces cerevisiae replication origins.

Breier AM, Chatterji S, Cozzarelli NR.

Genome Biol. 2004;5(4):R22. Epub 2004 Mar 4.


Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres.

Tsai HJ, Baller JA, Liachko I, Koren A, Burrack LS, Hickman MA, Thevandavakkam MA, Rusche LN, Berman J.

MBio. 2014 Sep 2;5(5):e01703-14. doi: 10.1128/mBio.01703-14.


Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM.

Science. 2001 Dec 14;294(5550):2357-60.


Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.

Berbenetz NM, Nislow C, Brown GW.

PLoS Genet. 2010 Sep 2;6(9):e1001092. doi: 10.1371/journal.pgen.1001092.


Conserved nucleosome positioning defines replication origins.

Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM.

Genes Dev. 2010 Apr 15;24(8):748-53. doi: 10.1101/gad.1913210. Epub 2010 Mar 29.


A Link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast.

Hoggard T, Shor E, Müller CA, Nieduszynski CA, Fox CA.

PLoS Genet. 2013;9(9):e1003798. doi: 10.1371/journal.pgen.1003798. Epub 2013 Sep 12.


Control of ATP-dependent binding of Saccharomyces cerevisiae origin recognition complex to autonomously replicating DNA sequences.

Biswas SB, Khopde SM, Biswas-Fiss EE.

Cell Cycle. 2005 Mar;4(3):494-500. Epub 2005 Mar 18.


Identification and characterization of ARS-like sequences as putative origin(s) of replication in human malaria parasite Plasmodium falciparum.

Agarwal M, Bhowmick K, Shah K, Krishnamachari A, Dhar SK.

FEBS J. 2017 Aug;284(16):2674-2695. doi: 10.1111/febs.14150. Epub 2017 Jul 27.


The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

Müller P, Park S, Shor E, Huebert DJ, Warren CL, Ansari AZ, Weinreich M, Eaton ML, MacAlpine DM, Fox CA.

Genes Dev. 2010 Jul 1;24(13):1418-33. doi: 10.1101/gad.1906410.


High-resolution analysis of four efficient yeast replication origins reveals new insights into the ORC and putative MCM binding elements.

Chang F, May CD, Hoggard T, Miller J, Fox CA, Weinreich M.

Nucleic Acids Res. 2011 Aug;39(15):6523-35. doi: 10.1093/nar/gkr301. Epub 2011 May 9.


Functional analysis of a replication origin from Saccharomyces cerevisiae: identification of a new replication enhancer.

Raychaudhuri S, Byers R, Upton T, Eisenberg S.

Nucleic Acids Res. 1997 Dec 15;25(24):5057-64.


The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication.

Shor E, Warren CL, Tietjen J, Hou Z, Müller U, Alborelli I, Gohard FH, Yemm AI, Borisov L, Broach JR, Weinreich M, Nieduszynski CA, Ansari AZ, Fox CA.

PLoS Genet. 2009 Dec;5(12):e1000755. doi: 10.1371/journal.pgen.1000755. Epub 2009 Dec 4.


The dual role of autonomously replicating sequences as origins of replication and as silencers.

Rehman MA, Yankulov K.

Curr Genet. 2009 Aug;55(4):357-63. doi: 10.1007/s00294-009-0265-7. Epub 2009 Jul 26. Review.


Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues.

Kawakami H, Ohashi E, Kanamoto S, Tsurimoto T, Katayama T.

Sci Rep. 2015 Oct 12;5:14929. doi: 10.1038/srep14929.


Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site.

Chang F, Theis JF, Miller J, Nieduszynski CA, Newlon CS, Weinreich M.

Mol Cell Biol. 2008 Aug;28(16):5071-81. doi: 10.1128/MCB.00206-08. Epub 2008 Jun 23.


The dynamics of eukaryotic replication initiation: origin specificity, licensing, and firing at the single-molecule level.

Duzdevich D, Warner MD, Ticau S, Ivica NA, Bell SP, Greene EC.

Mol Cell. 2015 May 7;58(3):483-94. doi: 10.1016/j.molcel.2015.03.017. Epub 2015 Apr 23.


Cell cycle dependent topological changes of chromosomal replication origins in Saccharomyces cerevisiae.

Fujita M, Hori Y, Shirahige K, Tsurimoto T, Yoshikawa H, Obuse C.

Genes Cells. 1998 Nov;3(11):737-49.

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